Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g00354 ATGCTTTCATATGAGATTAAAAATCCTTTGTTGGGTTTTGAAACATCTTTTAAAGGTTGTTTTTTCAGTGTCATAGACACTGAAAAAATGGATCTCAAGTTGATAATTGAAGAGCTTGATTCAATTGATGATGTTCCTTATGTGTTTATATGTCCAATCTCACTTGAACCAATGCAAGAGCCTGTGACACTTTGCACAGGTCAAACGTACGATAGATCTAACATCCTTAAATGGTTTTCACTTGGTCATAAAACATGTCCAACAACAATGCAAGAGTTGTGGGATGATTCAATCACTCCCAACAACACTCTCAAACAATTGATCTTTACTTGGTTCTCACACAGGTATTTGGGAATGAAGAAGAAGCTTGAAGATGTTCAAGGAAGAGTTTTAGAAACTTTGGAGACACTCAAGAAGGTAAAGGGTCAAAGTAGAGTCAAAGCTCTTAAGGATCTTAGGAAACTTGTTGTTTCTCATGTTTGTGCTAGGAAAACAGTGTTGGAAAATGGTGGGGTTGGTTTGGTTTGTTCTTTGTTAGGTTCTTTTACTTCACATGTTGTTGGTTGTGAAGCTATTGGTATCCTTGTGAATTTGGATTTGAGTTTAGAATTGAAGAGAAAGAATCTTATGCATCCAGCTAAAGTTTCATTGGTTGTTGATATCATGAATGAAGGAACTATTGAAACAAAGATGAATTGTGCTAAATTGATTGAAATGTTGTTGATGGAATTGGAAGGAAATGAAACCATGGTTGAGATTGTTTCAAGCTTGAGTCTTTTGGTTGGATTATTGAGATTAGTGAGAGATAAGAAACATCCAAATGGGATCTTAATTGGTCTCACATTGCTTAAAAAAGTACTATGTTGTCATGAATCAATTAGAAGTTCTGTGATAAGCATAGGAGCAATTCCTCAATTGATTGAGATTTTACCAAATTTGAATAATGAGTGTTTGGAGATAGCACTTTATATATTAGAGGTATTATCAACACTTGAAGAAGGGAAATTGGCATTGAAAGAATGTCCAAACATTATACCTAATGTGGTAAAGATGTTGATGAGAGTCTCAGAAAATTGTACACAATTTGCATTGTCAATATTGTGGGCTATTTACAATCTTGCACCTGAAGAATGTGCTTCAAAAGCTGTGGAAGCTGGATTGGCTTCAAAATTATTGCTTGTGATTCAGAGTGGTTGTAATCCTGTTTTGAAACAGAAATCTTCTGAGTTTTTGAAAATGTGTAGTGTGAATTATTCTACTAGTATTTTTATTTCTAAGTGTATGCTTACTACAACAATACAATGA 1305 0.3418 MLSYEIKNPLLGFETSFKGCFFSVIDTEKMDLKLIIEELDSIDDVPYVFICPISLEPMQEPVTLCTGQTYDRSNILKWFSLGHKTCPTTMQELWDDSITPNNTLKQLIFTWFSHRYLGMKKKLEDVQGRVLETLETLKKVKGQSRVKALKDLRKLVVSHVCARKTVLENGGVGLVCSLLGSFTSHVVGCEAIGILVNLDLSLELKRKNLMHPAKVSLVVDIMNEGTIETKMNCAKLIEMLLMELEGNETMVEIVSSLSLLVGLLRLVRDKKHPNGILIGLTLLKKVLCCHESIRSSVISIGAIPQLIEILPNLNNECLEIALYILEVLSTLEEGKLALKECPNIIPNVVKMLMRVSENCTQFALSILWAIYNLAPEECASKAVEAGLASKLLLVIQSGCNPVLKQKSSEFLKMCSVNYSTSIFISKCMLTTTIQ 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g00354 434 ProSiteProfiles U-box domain profile. 44 118 IPR003613 GO:0004842|GO:0016567
Mepo4g00354 434 CDD RING-Ubox_PUB 46 96 IPR045210 -
Mepo4g00354 434 SUPERFAMILY ARM repeat 142 415 IPR016024 -
Mepo4g00354 434 Gene3D - 123 429 IPR011989 -
Mepo4g00354 434 Pfam U-box domain 45 114 IPR003613 GO:0004842|GO:0016567
Mepo4g00354 434 SMART Ubox_2 48 111 IPR003613 GO:0004842|GO:0016567
Mepo4g00354 434 PANTHER WDSAM1 PROTEIN 39 421 IPR045185 GO:0061630
Mepo4g00354 434 SUPERFAMILY RING/U-box 41 113 - -
Mepo4g00354 434 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 122 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g00354 Mepo-Chr4 5344383 5346231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g00354 28 434 U-box Gene Family AT3G49810 61.671 0.0 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g00354 - - gmx:100803878 612.838