Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g00353 ATGGCTGAACAAACCGAGAAGGCTTTTTTGAAGCAAAATAAAGTGTTTTTATGCTCGAAGATATCTGGGAAGGGGAAGAGACCTGGAAAGGGTGGCAATCGTTTTCATAAATCTGTTGGCCTTGGTTTTAAGACTCCTAGGGAAGCCATTGAAGGAACCTATATTGACAAGAAGTGTCCCTTCACTGGTAATGTCTCAATCCGAGGCCGTATCCTATCCGGTACTTGTCATAGTGCTAAGATGAATAAGACCCTTATTGTTAGGAGGAATTATCTTCATTTCATTAAGAAATATCAGAGGTATGAGAAGCGCCATTCTAATATTCCTGCACACGTATCACCTTGTTTCCGAGTGAAGGAAGGGGATCATGTTATTATTGGCCAATGCAGGCCACTTTCGAAGACAGTGAGGTTCAATGTATTGAAAGTCATCCCAGCTGGATCTTCTAGTGGTGCTGGTGCCAAGAAGGCGTTTACAGGAATCTGA 486 0.4259 MAEQTEKAFLKQNKVFLCSKISGKGKRPGKGGNRFHKSVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILSGTCHSAKMNKTLIVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAGAKKAFTGI 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g00353 161 Pfam Ribosomal_S17 N-terminal 4 72 IPR032440 -
Mepo4g00353 161 ProSitePatterns Ribosomal protein S17 signature. 121 133 IPR019979 GO:0003735|GO:0005840|GO:0006412
Mepo4g00353 161 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 10 151 IPR000266 GO:0003735|GO:0005840|GO:0006412
Mepo4g00353 161 PRINTS Ribosomal protein S17 family signature 121 131 IPR000266 GO:0003735|GO:0005840|GO:0006412
Mepo4g00353 161 PRINTS Ribosomal protein S17 family signature 88 111 IPR000266 GO:0003735|GO:0005840|GO:0006412
Mepo4g00353 161 PRINTS Ribosomal protein S17 family signature 131 138 IPR000266 GO:0003735|GO:0005840|GO:0006412
Mepo4g00353 161 FunFam 40S ribosomal protein S11 1 160 - -
Mepo4g00353 161 Pfam Ribosomal protein S17 74 142 IPR000266 GO:0003735|GO:0005840|GO:0006412
Mepo4g00353 161 NCBIfam 30S ribosomal protein S17 54 143 IPR028333 -
Mepo4g00353 161 SUPERFAMILY Nucleic acid-binding proteins 68 147 IPR012340 -
Mepo4g00353 161 Gene3D - 1 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g00353 Mepo-Chr4 5341504 5343633 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g00353 1 161 Cytoplasmic Ribosomal Protein Gene Family AT5G23740 87.578 1.52e-93 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g00353 K02949 - dcr:108205964 290.426