Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g00281 ATGATTCTCTTTGTTTCTTCAAGCCTACTGGCTATGTTTTTCTCAGAGTTGTACCCTTCTGAAACTCGTAAACTGATTGAACGTCTCGTTAATTATGTCATTTACAAGGGTACATTTCTTCCACTGATTGTGCCACCAACACTTTATCAAGCAGGTCTTTGGTCAACTTGGTTGGCAGTACTTTGTTCTTTAAAGATGTTTCAAGCTCTGGCTAGAGATCGATTGGAGCGGCTGAATGCATCTCCATCTGCCACACCCTGGACATATCTTCGTGTATATTCAGCATTGTTATTCATTTTATTGGTTGATGTTCTCTGGCTTTGTCTTGAAATATATAGCACACATGGGTCCTCTATGTTCCTGTTACTTTTCTTTGAGCCTTTGAGTATTGCTTTCGAGACACTGCAGGCCATTTTGGTGCATGGATTTCAGTTACTTGACATATGGATTCATCATTCGGCTTGCAGTGGCAGTGATTTCCGAATACCTAAACTTCTTGATACATTAACGGCAGGTTCTTTATTGGAATGGAAGGGAATACTTATCCGGAACTTGGGATTTTTCCTAGATATGGCCACATTTTTTATGGCACTTGGTCATTACTTGTATATATGGCGGCTTCATGGCATGGCTTTCCATCTTGTAGATGCAGTGCTATTTCTAAATATACGTGCGTTACTTAGTGCAATGATAAACCGCATAAAAGGCTTTATTAGACTAAGGATAGCTCTAGGAGCACTTCATGCAGCTCTTCCCAATGCAACCACTGAAGAGCTAAGAGGATATGAAGATGAATGTGCTATTTGTAGAGAACCTATGGCTAAGGCTAAAAAGCTAAACTGCAATCACCTCTTCCATCTTGCGTGTTTGAGATCTTGGTTGGATCAAGGCCTGACTGAGATGTATACTTGTCCAACATGCCGAAAGCCACTTTTTGCAGGCCGGCCTGAAAATGAAACAAACTCTAGTACAGGGGTAATATCTAGTGATGAGCAACTTGCACGCCAAATGAGTGCAGGATTTGATCGTCAAAACTCGGCTAGACATAACATGCCTGCAGGATTGTTTCCAAATCCGACACTCAACAATGCCGAAGGTGTTCCTTGGAGGGGCGCAGGACTGGACTCAGGTTGGTTGCATTCTTGGCCAAATCAGGGTGTTGATGGAGCTGGTCCATCTACTGCTATCAGAACAGTAGGTCTCGGAAGAGTTCAAATGATGATGAGACATCTTGCATCAGTCGGAGAAACCTATGCTCAGACAACCTTTGATGATGCTTCTTGGAATCTTTGGCCTATTAATCCTTCTCAGGCTTCCGCGAGTGGTCCAAGTCAGGTGACCACTCCTTCCCCTGGTGTAAGACTGCCAGGAGGAAATGGGGGTTTACATATAAGGACCGCTTCACGGTCTGCAAATGATAATTTAGCAAATGTGCTTGCTATGGCTGAGACTGTTCGGGAGGTTCTACCTCATATTCCAGACGACATAATATTCCAGGACTTGCAGCGGACAAATTCTGTTACAGTTACTGTGAATAATCTTCTCCAAATGTGA 1554 0.4305 MILFVSSSLLAMFFSELYPSETRKLIERLVNYVIYKGTFLPLIVPPTLYQAGLWSTWLAVLCSLKMFQALARDRLERLNASPSATPWTYLRVYSALLFILLVDVLWLCLEIYSTHGSSMFLLLFFEPLSIAFETLQAILVHGFQLLDIWIHHSACSGSDFRIPKLLDTLTAGSLLEWKGILIRNLGFFLDMATFFMALGHYLYIWRLHGMAFHLVDAVLFLNIRALLSAMINRIKGFIRLRIALGALHAALPNATTEELRGYEDECAICREPMAKAKKLNCNHLFHLACLRSWLDQGLTEMYTCPTCRKPLFAGRPENETNSSTGVISSDEQLARQMSAGFDRQNSARHNMPAGLFPNPTLNNAEGVPWRGAGLDSGWLHSWPNQGVDGAGPSTAIRTVGLGRVQMMMRHLASVGETYAQTTFDDASWNLWPINPSQASASGPSQVTTPSPGVRLPGGNGGLHIRTASRSANDNLANVLAMAETVREVLPHIPDDIIFQDLQRTNSVTVTVNNLLQM 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g00281 517 FunFam E3 ubiquitin protein ligase RIN2 476 516 - -
Mepo4g00281 517 ProSiteProfiles CUE domain profile. 477 517 IPR003892 GO:0043130
Mepo4g00281 517 Pfam CUE domain 481 517 IPR003892 GO:0043130
Mepo4g00281 517 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF8 9 517 - -
Mepo4g00281 517 CDD RING-H2_AMFR 264 311 - -
Mepo4g00281 517 CDD CUE_RIN3_plant 478 515 IPR035667 -
Mepo4g00281 517 SUPERFAMILY RING/U-box 251 314 - -
Mepo4g00281 517 Gene3D - 476 516 - -
Mepo4g00281 517 ProSiteProfiles Zinc finger RING-type profile. 266 308 IPR001841 -
Mepo4g00281 517 FunFam E3 ubiquitin protein ligase RIN2 239 318 - -
Mepo4g00281 517 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 316 IPR013083 -
Mepo4g00281 517 Pfam Ring finger domain 264 308 IPR001841 -
Mepo4g00281 517 SMART ring_2 266 307 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g00281 Mepo-Chr4 4355275 4360121 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g00281 23 325 C3H Transcription Factor Family AT3G16090 29.073 4.02e-27 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g00281 K10636 - gmx:100820578 890.952