Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g00202 ATGGGAATACCAAACGGTGGTGGGTGTAGCAGATCTTGGGAAGAAGACATTTATTGGACCCATTTTCAATTCATTCATTTCACTCAATTTCTTCGCTCCAATGATTTTGATCAACAATTGGCACTTCCCGAAACATTTTCAAACAACGTCAAAAAGAAGCTGCCTGAAAATGTGGTCCTAAAAGGTCCTGGTGGAGTGACATGGAATATAGGGTTGACAAGTAGAGACGGTACATTTTACTTCACGCAAGGGTGGGATCAATTCGTTAAAGACCACTCTTTGAAAGAGAATGACTTCCTGTTCTTTAAGTACAATGGTGAATCGTTGTTTGAGGTTTTAATATTTGATGGCGAGAGTTTCTGTGAGAAGGCGGCAGCTTATTTTGTTCGGAAATGTGGGCGTGCCGAGGCTGCCGCCCAAACTGAACAAGGGGGTGGATGTTCTAGCAAGGGAAGAGAGACAAACAATTCTGTAGATGAAGTCAATACTCCTTCTAATGGTGTTGATGAAGGTGTTTCACATGAAAAATCTTTGCATCTTAACAGTATCCGAGTGCCATTTGCTGTACCTTCTGAAACCACTAATGGAAAGACTTCTAATGCTGCTGTTGAATCTACCTCCCCTGAGCAATTAATGTCTGATGCAGCAGTCACTGAGACTGAGCCAACAGCTGTTCCCTCCCAAACAACTGGTAAACGGACGAGGAGGCCTGTTTATGCTGTTCCGTCTGTCCCGAGTAAGAAGAGAGGAAGACCACCCCGAACGTCTAATTCTCAGGAGAAAGCTCTTAATTGGGTGACTGATGCTGAACCTGCCCCAGCGTCTCCAAAGGGTTCTCCAAAGACGCAGGAACTATATACCTCAAATAGAAGGCCTGTCACAAAAGATGAGATTGAAAAAACTCTTCAGGTGGCTCAGGCAGCATGTACCGAGGAAAGCTTGCTTGTAACTATGCGACCTTCACATGTATACAAGAGATTCTTCGTGTCATTCCCTAACAAGTGGATACTAAACCACCTTGCTCCTTCGTCTCAAGATGTGATATTACGCATGGGTAAGAATGAATGGCTTGGGAAATACTGCTATCATAATATTCGTAACAATGGAGGACTTACTGGTGGATGGAAGTATTTTGCGCTCGATAACAACCTTGAAGAGTTTGATGTATGTTTGTTCAAACCAGCTGGTCATTTGCATGACATATTGATCTTAGAAATGAGCATTTTTAGAGTTGTTGAGGAGATTACTCCTCTTACTGCGGTGCATTCTCCAGGAAAGAAGAGGGGCTTGAGTTCTACAGGAAAGAAGAGGGGAGTTAAGAGAACACTGACCAGTGCTGCCCAAACAGAACTTGAGGCCATTGAAGGAGCTGAGACAGACGACCAGGGACTGCAAGCTGAAGATGATGAACTCTTATCTCAAATACGGGCCAAAAGGAACATAGTAAAATCATCCAAATATCTCAAAGATTATGTGGTACCAAAGAAGAAAACCAGCTTAGATCTAGAAGGCACCTCTGCTAGCTGA 1527 0.4342 MGIPNGGGCSRSWEEDIYWTHFQFIHFTQFLRSNDFDQQLALPETFSNNVKKKLPENVVLKGPGGVTWNIGLTSRDGTFYFTQGWDQFVKDHSLKENDFLFFKYNGESLFEVLIFDGESFCEKAAAYFVRKCGRAEAAAQTEQGGGCSSKGRETNNSVDEVNTPSNGVDEGVSHEKSLHLNSIRVPFAVPSETTNGKTSNAAVESTSPEQLMSDAAVTETEPTAVPSQTTGKRTRRPVYAVPSVPSKKRGRPPRTSNSQEKALNWVTDAEPAPASPKGSPKTQELYTSNRRPVTKDEIEKTLQVAQAACTEESLLVTMRPSHVYKRFFVSFPNKWILNHLAPSSQDVILRMGKNEWLGKYCYHNIRNNGGLTGGWKYFALDNNLEEFDVCLFKPAGHLHDILILEMSIFRVVEEITPLTAVHSPGKKRGLSSTGKKRGVKRTLTSAAQTELEAIEGAETDDQGLQAEDDELLSQIRAKRNIVKSSKYLKDYVVPKKKTSLDLEGTSAS 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g00202 508 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 33 415 IPR044837 -
Mepo4g00202 508 SMART B3_2 314 407 IPR003340 GO:0003677
Mepo4g00202 508 SMART B3_2 27 118 IPR003340 GO:0003677
Mepo4g00202 508 MobiDBLite consensus disorder prediction 250 264 - -
Mepo4g00202 508 CDD B3_DNA 317 410 IPR003340 GO:0003677
Mepo4g00202 508 MobiDBLite consensus disorder prediction 189 234 - -
Mepo4g00202 508 SUPERFAMILY DNA-binding pseudobarrel domain 22 116 IPR015300 -
Mepo4g00202 508 CDD B3_DNA 26 116 IPR003340 GO:0003677
Mepo4g00202 508 ProSiteProfiles B3 DNA-binding domain profile. 314 412 IPR003340 GO:0003677
Mepo4g00202 508 MobiDBLite consensus disorder prediction 422 442 - -
Mepo4g00202 508 ProSiteProfiles B3 DNA-binding domain profile. 25 118 IPR003340 GO:0003677
Mepo4g00202 508 SUPERFAMILY DNA-binding pseudobarrel domain 314 396 IPR015300 -
Mepo4g00202 508 Pfam B3 DNA binding domain 316 396 IPR003340 GO:0003677
Mepo4g00202 508 Pfam B3 DNA binding domain 27 116 IPR003340 GO:0003677
Mepo4g00202 508 MobiDBLite consensus disorder prediction 139 172 - -
Mepo4g00202 508 Gene3D - 292 414 IPR015300 -
Mepo4g00202 508 Gene3D - 20 121 IPR015300 -
Mepo4g00202 508 MobiDBLite consensus disorder prediction 142 170 - -
Mepo4g00202 508 MobiDBLite consensus disorder prediction 189 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g00202 Mepo-Chr4 3404354 3409276 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g00202 5 410 REM Transcription Factor Family AT4G33280 35.539 5.56e-68 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mepo4g00202 B3 3.1e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g00202 - - mtr:11414255 1004.2