Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g00100 ATGTCCCTTGAAGAGACTCTAAGATCTCTCTCCCTTGACTACCTGAATCTCCTCATCAACGGCCAAGCCTTCAGCGACGTCACTTTCCAAGTTGAAGGTCGTTTGGTTCACGCTCATCGCTGCATCTTAGCAGCAAGGAGTCTTTTCTTCAGGAAATTCTTCTGTGGTCCCGACCCACCTTCGGGACTAGACCCAATAGGAGGAGGATCCTCTCGTCAGCCGACAGTACGACCTGGTGTCATTCCGGTGAACTCAGTCGGCTACGAGGTGTTCCTCCTCCTGTTGCAGTTTCTGTACAGTGGACAAGTTTCTATTGTTCCTCAGAAACATGAGCCTAGACCTAATTGTGGTGAGAGAGGGTGCTGGCATACGCATTGTACCTCAGCCGTTGATCTTGCCCTTGACACCTTAGCTGCCGCTAGATACTTTGGCGTTGAACAGCTTGCATTGCTCACTCAGAAGCAACTAGTGAGCATGGTAGAGAAAGCCTCAATAGACGATGTGATGAAAGTACTAATAGCTTCAAGAAAGCAAGAAATGCCCCAACTTTGGACAACATGTTCCCACCTTGTTGCCAAGTCTGGTCTCCCACCTGAAATCCTAGCCAAGCACCTCTCCATTGACGTAGTCGCCAAAATCGAAGAACTTCGTCTAAAATCCTCCTTAGCACGCCGCTCCTTAATGCCACTCCACCACCACCATCACCATCATCATAACCACGACTTTGGTGACCTCGAAGACCAGAAGATCCGCCGAATGAGGCGGGCCCTTGACTCCTCGGATGTCGAACTAGTCAAACTCATGGTCATGGGAGAAGGCCTAAACCTCGATGAAGCATTGGCATTACACTATGCAGTTGAGAATTGTAGCCGAGAAGTGGTGAAAGCCCTGCTTGAACTCGGTGCTGCGGATGTTAACTATCCGGCTGGACCCGCGGGCAAAACTTCCCTTCATGTGGCTGCCGAGATGGTGTCGCCGGAGATGGTGGCAGTTTTGCTTGACCACCATGCAGATCCCACAGTTAGAACCGTTGATGGTGTGACATCTTTGGATATACTTAGAACCCTAACCTCTGATTTTCTCTTCAAAGGTGCTGTTCCTGGATTAAACCACATTGAACCAAACAAGTTAAGATTGTGTTTGGAACTCGTTCAATCTGCAGCTCTTGTTCTGTCACGTGAAGAAAACAATGCTAGTAACAATAATAACAACAACAATGCTTCTTCATCAGCAGCACCAATTTACCCTCCAATGAGTGAAGATCATAGCAGCAGTAGCAGTGGCAACAACAACAATAATAACAACATTGGTAACCTGAATTTGGATTCAAGATTGGTGTACCTCAACCTTGGTGCTACTCAAATGGGTGGTGATGATGATAATCGACACAACAATAGTCATAGAGAAGCCATGAATCGTCAAGGTGGTCATGGATGTGACCCAACAATGTATCATCACTCTCATGACTTCTAA 1473 0.4732 MSLEETLRSLSLDYLNLLINGQAFSDVTFQVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPIGGGSSRQPTVRPGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLVSMVEKASIDDVMKVLIASRKQEMPQLWTTCSHLVAKSGLPPEILAKHLSIDVVAKIEELRLKSSLARRSLMPLHHHHHHHHNHDFGDLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTSLHVAAEMVSPEMVAVLLDHHADPTVRTVDGVTSLDILRTLTSDFLFKGAVPGLNHIEPNKLRLCLELVQSAALVLSREENNASNNNNNNNASSSAAPIYPPMSEDHSSSSSGNNNNNNNIGNLNLDSRLVYLNLGATQMGGDDDNRHNNSHREAMNRQGGHGCDPTMYHHSHDF 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g00100 490 SUPERFAMILY POZ domain 10 158 IPR011333 -
Mepo4g00100 490 CDD BTB_POZ_NPR_plant 8 160 - -
Mepo4g00100 490 MobiDBLite consensus disorder prediction 456 490 - -
Mepo4g00100 490 FunFam regulatory protein NPR5 isoform X2 243 360 - -
Mepo4g00100 490 Gene3D - 245 360 IPR036770 -
Mepo4g00100 490 Pfam Domain of unknown function (DUF3420) 195 254 IPR024228 -
Mepo4g00100 490 SMART BTB_4 25 160 IPR000210 GO:0005515
Mepo4g00100 490 MobiDBLite consensus disorder prediction 460 474 - -
Mepo4g00100 490 Gene3D Potassium Channel Kv1.1; Chain A 3 193 IPR011333 -
Mepo4g00100 490 ProSiteProfiles BTB domain profile. 25 107 IPR000210 GO:0005515
Mepo4g00100 490 ProSiteProfiles Ankyrin repeat region circular profile. 312 338 - -
Mepo4g00100 490 MobiDBLite consensus disorder prediction 395 437 - -
Mepo4g00100 490 SMART ANK_2a 312 341 IPR002110 GO:0005515
Mepo4g00100 490 SMART ANK_2a 277 307 IPR002110 GO:0005515
Mepo4g00100 490 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 490 IPR044284 GO:0099402
Mepo4g00100 490 Pfam Ankyrin repeats (3 copies) 260 342 IPR002110 GO:0005515
Mepo4g00100 490 ProSiteProfiles Ankyrin repeat profile. 312 344 IPR002110 GO:0005515
Mepo4g00100 490 FunFam regulatory protein NPR5 isoform X1 4 193 - -
Mepo4g00100 490 Pfam BTB/POZ domain 16 110 IPR000210 GO:0005515
Mepo4g00100 490 SUPERFAMILY Ankyrin repeat 271 355 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g00100 Mepo-Chr4 2213460 2217280 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Mepo4g00100 BTB 2.5e-15 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g00100 K14508 - zju:107433767 764.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g00100 4 2213460 2217280 Mepo4g00100 4 2213460 2217280 ECH
Mepo3g02767 3 37599453 37602976 Mepo4g00100 4 2213460 2217280 PCT