Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g00088 ATGTCAAGTAGTGGAGATACTCATTGGTGTTATAATTGCATGAGGCCGGTTCGACTGGGACGGAGACATACTGTTTGCTCTAGTTGTGATGGGGGATTTGTTCAAGATCTCAACGATATGGTCCATTCTAGCTATGGAGTGGACAACGTTGAAGAACTCGGACAAAGGTATCAAATGGCAGATAGGGCACAATCGGATTCAATTCCCGAACACGCTCCAAGGTTTACTACTCCTTTGTTAATCTATGGTGGCCAAATTCCATTCAGGTTTTCTAGACAAGGTGGCATTGATGCTCTCTTTAATGGGACTCCGGGAACTGGTGTGACAATAGGTAACTCGGTTAACTATTTTACCGGTCCTGGAGTTGAAGAACTGTTAGAACAGCTTTCTGCTAATGACCGCAGAGGCCCCCCACCTGCATCGCGGTCATCTATAGATGCAATTCCTATTGTGAAGATATCGTCGAGGCATCTTCGATCAGATCCACATTGTCCTGTATGCCAAGATAAATTTGAGCTTGGGTCTGATGCAAGACGAATGCCATGTAAGCATATGTTTCACTCAGATTGTATTGTACCATGGTTGGTTCAGCATAACACCTGCCCTGTTTGCCGTCAAGAATTGCCACAACAGAGTGGAAGAAGGAGAAACCCTTTTTCGTTTTTGTGGCCTTTCAGCTCTTCTAATTCTAGAAGTAATGACGGAGGAACTGGAAGCAGCTCACTAACATCAGGTATACCTGAAAATAGCCAGAATGCACAACATTCTGGGTGGCCATTTGAGTGA 786 0.4466 MSSSGDTHWCYNCMRPVRLGRRHTVCSSCDGGFVQDLNDMVHSSYGVDNVEELGQRYQMADRAQSDSIPEHAPRFTTPLLIYGGQIPFRFSRQGGIDALFNGTPGTGVTIGNSVNYFTGPGVEELLEQLSANDRRGPPPASRSSIDAIPIVKISSRHLRSDPHCPVCQDKFELGSDARRMPCKHMFHSDCIVPWLVQHNTCPVCRQELPQQSGRRRNPFSFLWPFSSSNSRSNDGGTGSSSLTSGIPENSQNAQHSGWPFE 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g00088 261 MobiDBLite consensus disorder prediction 227 261 - -
Mepo4g00088 261 FunFam E3 ubiquitin-protein ligase RING1-like 127 211 - -
Mepo4g00088 261 CDD RING-H2_RNF126-like 164 205 - -
Mepo4g00088 261 SMART ring_2 164 204 IPR001841 -
Mepo4g00088 261 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 211 IPR013083 -
Mepo4g00088 261 Pfam Ring finger domain 163 205 IPR001841 -
Mepo4g00088 261 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 91 209 - -
Mepo4g00088 261 ProSiteProfiles Zinc finger RING-type profile. 164 205 IPR001841 -
Mepo4g00088 261 SUPERFAMILY RING/U-box 144 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g00088 Mepo-Chr4 2100885 2102425 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g00088 111 209 C3H Transcription Factor Family AT5G01980 43.564 6.81e-24 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g00088 K11982 - gmx:100787242 357.066