Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g00061 ATGCCAACCATCGCCGCCGTCACTGGTCACGCCTCTGCCGCAGGAATCATGGAAGTGGAGATGGAAAATTCAACATTGACTGAATTGTCTGTACCTGGTTCTGATGTTCAAGATCAAACCCCTCTAGTTTCGTCCCAGCCAACTCAACCACCGGTTATTACTCCTGTCTTGCCACCTCTGGCTCCAATTCCTACAGCTTCTTCCTCTCTTGTCCGACCTCTGGCACCGCTCCCAATCCGCCCACCGGTTATTAGGCCGCCGGTACCACAAAATGGTGAGGTTGGGTCTAGTGATTCTGATTCAGACGATGATGATGATACAGACACCAGAATCAATAAGGGTACTGGGGAGTATGAGATATCAGAAGAGAGTAGACTGGTGAGGGAGCGGCAGGAGAAAGCCATGCAAGACCTTATGATGAGGAGGCGAGCCGCTGCTCTTGCTGTTCCCACCAATGACATGGCAGTCAGGGCCCGTCTTCGCCATCTTGGTGAGCCGATTACTCTCTTTGGTGAGAGGGAGATGGAGAGACGAGATAGGTTGCGGATGATTATGGCAAAGCTGGATGCTGATGGTCAGCTGGAAAAGCTAATGAAAGCTCTTGAGGATGAAGAGGCCGCAACTTCTGCTCCAAAAGATGAGGCTGAGGATGATCTGCAATATCCTTTTTACACTGAAGGGTCAAAGTCTCTCCTTGATGCAAGGATTGATATTGCAAAATATTCTTTACTAAAGGCTGCATTGCGGATTCAACGTGCCCAGAGAAGAAGAGAGGATCCGGATGAAGATGTGGAGGCGGAGATAGATTGGACATTGAATCAGGCAGCGAATTTGAATCTTGAATTCAGTGAAATCGGAGATGATCGACCACTTACTGGTTGCTCGTTCTCCCGGGATGGAAAAGGGCTTGCTACCTGTTCTTTCACTGGAGCTACCAAGTTGTGGAGCATGCCTAATGTTAAAAAAGTTTCTACCTTGAAGGGGCACACCCAGCGTGCTACTGATGTTGCTTATTCTCCTGTGCACAAAAATCATTTAGCAACTGCCTCTGCTGACCGGACAGCAAAGTATTGGAATGATCAAGGAGCTCTTTTGGGAACATTTAAGGGTCATCTTGAACGTCTTGCACGCATTGCCTTCCATCCATCAGGGAAGTACTTGGGCACTGCTAGCTACGACAAGACATGGAGGTTATGGGATGTTGAAACAGAAGAGGAGTTGCTTCTTCAAGAAGGCCATAGTAGAAGTGTATATGGTTTGGATTTCCATCATGATGGATCGTTAGCCGCGTCTTGTGGATTGGACGCACTGGCTCGTGTATGGGACCTTCGAACTGGGAGAAGTGTTCTTGCACTAGAAGGTCATGTCAAATCGATTCTTGGCATCAGTTTTTCTCCCAATGGATATCATTTAGCCACCGGTGGTGAAGATAACACTTGTCGTATTTGGGACTTGAGGAAGAAGAAGTCCTTGTACACCATTCCCGCTCACTCTAATCTAATATCACAGGTCAAATTTGAGCCACACGAGGGTTACTTTTTGGTAACTGCCTCATATGACATGACGGCCAAGGTTTGGTCAGGCCGGGACTTTAAGCCTGTGAAGACACTATCAGGGCATGAAGCTAAAGTTACTTCTCTGGATGTTCTTGGAGATGGTGGGTATATTGTTACCGTCTCCCATGATCGCACCATAAAGCTGTGGTCCAGCGGCATTACTAGTGAGCATGCTATGGATGTTGACTAA 1746 0.4771 MPTIAAVTGHASAAGIMEVEMENSTLTELSVPGSDVQDQTPLVSSQPTQPPVITPVLPPLAPIPTASSSLVRPLAPLPIRPPVIRPPVPQNGEVGSSDSDSDDDDDTDTRINKGTGEYEISEESRLVRERQEKAMQDLMMRRRAAALAVPTNDMAVRARLRHLGEPITLFGEREMERRDRLRMIMAKLDADGQLEKLMKALEDEEAATSAPKDEAEDDLQYPFYTEGSKSLLDARIDIAKYSLLKAALRIQRAQRRREDPDEDVEAEIDWTLNQAANLNLEFSEIGDDRPLTGCSFSRDGKGLATCSFTGATKLWSMPNVKKVSTLKGHTQRATDVAYSPVHKNHLATASADRTAKYWNDQGALLGTFKGHLERLARIAFHPSGKYLGTASYDKTWRLWDVETEEELLLQEGHSRSVYGLDFHHDGSLAASCGLDALARVWDLRTGRSVLALEGHVKSILGISFSPNGYHLATGGEDNTCRIWDLRKKKSLYTIPAHSNLISQVKFEPHEGYFLVTASYDMTAKVWSGRDFKPVKTLSGHEAKVTSLDVLGDGGYIVTVSHDRTIKLWSSGITSEHAMDVD 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g00061 581 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 537 569 - -
Mepo4g00061 581 PRINTS G protein beta WD-40 repeat signature 387 401 IPR020472 -
Mepo4g00061 581 PRINTS G protein beta WD-40 repeat signature 556 570 IPR020472 -
Mepo4g00061 581 PRINTS G protein beta WD-40 repeat signature 471 485 IPR020472 -
Mepo4g00061 581 SUPERFAMILY PRP4-like 134 189 IPR036285 -
Mepo4g00061 581 Gene3D - 452 577 IPR015943 GO:0005515
Mepo4g00061 581 ProSitePatterns Trp-Asp (WD) repeats signature. 429 443 IPR019775 -
Mepo4g00061 581 ProSiteProfiles Trp-Asp (WD) repeats profile. 326 359 IPR001680 GO:0005515
Mepo4g00061 581 ProSiteProfiles Trp-Asp (WD) repeats profile. 410 451 IPR001680 GO:0005515
Mepo4g00061 581 Pfam pre-mRNA processing factor 4 (PRP4) like 156 182 IPR014906 -
Mepo4g00061 581 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 410 447 - -
Mepo4g00061 581 ProSiteProfiles Trp-Asp (WD) repeats profile. 494 536 IPR001680 GO:0005515
Mepo4g00061 581 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 494 527 - -
Mepo4g00061 581 SMART WD40_4 445 484 IPR001680 GO:0005515
Mepo4g00061 581 SMART WD40_4 319 359 IPR001680 GO:0005515
Mepo4g00061 581 SMART WD40_4 530 569 IPR001680 GO:0005515
Mepo4g00061 581 SMART WD40_4 361 400 IPR001680 GO:0005515
Mepo4g00061 581 SMART WD40_4 277 316 IPR001680 GO:0005515
Mepo4g00061 581 SMART WD40_4 403 442 IPR001680 GO:0005515
Mepo4g00061 581 SMART WD40_4 487 527 IPR001680 GO:0005515
Mepo4g00061 581 CDD WD40 290 569 - -
Mepo4g00061 581 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 368 405 - -
Mepo4g00061 581 FunFam U4/U6 small nuclear ribonucleoprotein PRP4-like protein 412 581 - -
Mepo4g00061 581 MobiDBLite consensus disorder prediction 79 120 - -
Mepo4g00061 581 MobiDBLite consensus disorder prediction 28 50 - -
Mepo4g00061 581 Pfam WD domain, G-beta repeat 532 569 IPR001680 GO:0005515
Mepo4g00061 581 Pfam WD domain, G-beta repeat 490 527 IPR001680 GO:0005515
Mepo4g00061 581 Pfam WD domain, G-beta repeat 363 400 IPR001680 GO:0005515
Mepo4g00061 581 Pfam WD domain, G-beta repeat 449 484 IPR001680 GO:0005515
Mepo4g00061 581 Pfam WD domain, G-beta repeat 411 442 IPR001680 GO:0005515
Mepo4g00061 581 Pfam WD domain, G-beta repeat 322 359 IPR001680 GO:0005515
Mepo4g00061 581 ProSiteProfiles Trp-Asp (WD) repeats profile. 368 409 IPR001680 GO:0005515
Mepo4g00061 581 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 452 486 - -
Mepo4g00061 581 Gene3D - 127 195 IPR036285 -
Mepo4g00061 581 ProSiteProfiles Trp-Asp (WD) repeats profile. 537 569 IPR001680 GO:0005515
Mepo4g00061 581 ProSitePatterns Trp-Asp (WD) repeats signature. 387 401 IPR019775 -
Mepo4g00061 581 Coils Coil 187 207 - -
Mepo4g00061 581 SUPERFAMILY WD40 repeat-like 278 568 IPR036322 GO:0005515
Mepo4g00061 581 MobiDBLite consensus disorder prediction 28 53 - -
Mepo4g00061 581 MobiDBLite consensus disorder prediction 106 120 - -
Mepo4g00061 581 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 326 359 - -
Mepo4g00061 581 SMART pr04_2 151 204 IPR014906 -
Mepo4g00061 581 ProSiteProfiles Trp-Asp (WD) repeats profile. 452 493 IPR001680 GO:0005515
Mepo4g00061 581 PANTHER WD40 REPEAT PROTEIN 101 569 - -
Mepo4g00061 581 ProSitePatterns Trp-Asp (WD) repeats signature. 471 485 IPR019775 -
Mepo4g00061 581 Gene3D - 265 451 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g00061 Mepo-Chr4 1199476 1205568 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g00061 372 568 U-box Gene Family AT2G33340 22.172 2.16e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g00061 K12662 - gmx:100788948 863.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g00061 4 1199476 1205568 Mepo4g00061 4 1199476 1205568 ECH