Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g00039 ATGAGGAAGAAAGGTACTCCTTCTTGTTCCTTTCATAATCCATGTTCTTCTTTTCATTCATTCGATGATAATGAGAAATCTCAAGGTTCGAGAATGTATGCGTGTGATTTGTGCGGCAAAAAGTTCAACTCTGGCAACGCACTCGGTGGCCACAAAACATCTCACCGCCGCTCACACCTTCAAAGAAACGATCATGCTATTAATAAGGATGATAATGATGATGAGAAACAGAAACATAGTTATCCTGTTTGCAACAAGGTTTTTTCATCCACTAAGGCTTTCTGTGGACATATGATATTGCACTGTGAAAACGGTTCCAAGAGTATTCAATCGCCAACCACATCCTTGGAACAATTTCAATTTCAAGTTGGTATTGCACCACCAGCTATTGACTTAACCAAGTATTCGCCTATGCCAAAATCCCATACCACCAATAAACGTTCTATCACGAGGAGAAATATCATTGATCATGAACATATTAATGGAGCACATACACTCTTCCATATCTCTTGCACTGCTGCTCGTGGTGGTGATCATGGTCATCTACATAAAAAGCTCAAAGCTTCAACCATTGTGGATAATGACAAGATCGAGAAACAAGTTAGTGACATCAATGAAACACTGACGACCAAGGTGAAGGATAAAAATAACCGTAAAAAGAGTTTGTTGTTGAGATTCAAGGTTAAAGACAACAAGGTCGTGCAATGCATCCAAGGTGAAGAAAAGAAGAAAAATAACAAAGGTGGTGAAACCGGGAGGGAACAGAGTTCTAATGAATTGAAGCCAAAAGGAGTTGTTATGAATTTTGATTTGAATGAGCTTCCAACTGAAGATGTTACACATGAATGA 849 0.3887 MRKKGTPSCSFHNPCSSFHSFDDNEKSQGSRMYACDLCGKKFNSGNALGGHKTSHRRSHLQRNDHAINKDDNDDEKQKHSYPVCNKVFSSTKAFCGHMILHCENGSKSIQSPTTSLEQFQFQVGIAPPAIDLTKYSPMPKSHTTNKRSITRRNIIDHEHINGAHTLFHISCTAARGGDHGHLHKKLKASTIVDNDKIEKQVSDINETLTTKVKDKNNRKKSLLLRFKVKDNKVVQCIQGEEKKKNNKGGETGREQSSNELKPKGVVMNFDLNELPTEDVTHE 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g00039 282 MobiDBLite consensus disorder prediction 60 78 - -
Mepo4g00039 282 MobiDBLite consensus disorder prediction 239 257 - -
Mepo4g00039 282 ProSiteProfiles Zinc finger C2H2 type domain profile. 33 60 IPR013087 -
Mepo4g00039 282 MobiDBLite consensus disorder prediction 239 282 - -
Mepo4g00039 282 Pfam C2H2-type zinc finger 83 101 - -
Mepo4g00039 282 Pfam C2H2-type zinc finger 33 57 - -
Mepo4g00039 282 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 3 278 IPR044653 GO:0003700
Mepo4g00039 282 MobiDBLite consensus disorder prediction 49 78 - -
Mepo4g00039 282 ProSitePatterns Zinc finger C2H2 type domain signature. 35 55 IPR013087 -
Mepo4g00039 282 SMART c2h2final6 33 55 IPR013087 -
Mepo4g00039 282 SMART c2h2final6 79 101 IPR013087 -
Mepo4g00039 282 SUPERFAMILY beta-beta-alpha zinc fingers 29 58 IPR036236 -
Mepo4g00039 282 Gene3D Classic Zinc Finger 30 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g00039 Mepo-Chr4 847292 848140 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g00039 33 101 C2H2 Transcription Factor Family AT5G61470 37.681 3.84e-10 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo4g00039 zf-C2H2_6 7.9e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g00039 - - mtr:25489007 152.525