Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g00019 ATGGGGAGAGGAAAGATTGAGATTAAGAAGATTGAGAATTTGAATAACAGGCAAGTTACATTTTCCAAGAGACGCAATGGTTTGCTCAAAAAAGCCAAGGAGTTGTCTGTTCTTTGTGATGCAGAGGTTGCTGTTATCATATATTCTGGCACTGGCAAGCTTTATGAGTTTTCAAGCACAAGCATGGAGCACACCATTTCAAGGTACGCTAACCGAGGCCTTGGTTTGAATAATGGAGCAGTACAGGAACAACCCAGTGATCAGCCTCCACTACAAGTTGTGGAGCATGATACGACCATTATGCAGGAAGAAATAACAAAACTTCGTTCAGCTTACTTAAGAATGAGCGGTAAGGAGCTTGATGGATTGGGCCTTAAAGAACTGCAGTACCTAGAACATCAACTCTGTGAAGGGATATCAGCTGTCAAAAATAAGAAGCTCCCTGGCTTAAACAGGGATAAGGCCTATTTTAGCGCTCTGCCTTTGTCCTCTGCGCCACCCTTTACCCCGCTGGGGTGTCTAAACACCAGAACTGTCGGTGGCACTGCCTTGTGGCTGTCCTTTCTGGTGGTCTTGAGTGTCGGTCGGTTTCTTAACCTGTTGGTGTATATTCGAGCACCATCTGCGTCTGGTTTCGAGTTGGAGCAGTCAGAGTTCCCTTCAATGTGCTTCCGCCAGCGTACTACTTGGTGGATTGTTTTCTTGTCCTTTGGTTTCCTGGGTTGGTCTATATCTGTTGAGAACTGCAGATTTGGGGTTCGTTATCTGTGTTGGCTTTCGAATCTTTTGCCATCCTCGAGATCAGAATTCAATGTTCCTAATTGTTTGTATGCTTTTTCTTTTACATTATGGTTTCGAGCCCATACTCGGGAACAAGTGCTTGCTGAACAACTTAAGAGATCCAGGTTTCAGGAGCAAAAGGCTATGATGGAGAATGAAGCTATTCGCAAACAACTTGAGGAGATAGTAAATAAAAGAAAGGCAGAGTTCATTGAATTTCATCCGTTGAATAGGACAATTTCAATCAACGGTTTAAAACCTCCTTTCAATTATGCTTTAGAGGGTAACAAGATTTCAGATACTTCCTTGCAGTTAGGGTTGTCATCCGATTATGATGACAAGAGGAAAGAATGCAAGATAGAACCTAGCAACAACTCGGGGAGTCAAGTTGCCTCACAGTGA 1182 0.434 MGRGKIEIKKIENLNNRQVTFSKRRNGLLKKAKELSVLCDAEVAVIIYSGTGKLYEFSSTSMEHTISRYANRGLGLNNGAVQEQPSDQPPLQVVEHDTTIMQEEITKLRSAYLRMSGKELDGLGLKELQYLEHQLCEGISAVKNKKLPGLNRDKAYFSALPLSSAPPFTPLGCLNTRTVGGTALWLSFLVVLSVGRFLNLLVYIRAPSASGFELEQSEFPSMCFRQRTTWWIVFLSFGFLGWSISVENCRFGVRYLCWLSNLLPSSRSEFNVPNCLYAFSFTLWFRAHTREQVLAEQLKRSRFQEQKAMMENEAIRKQLEEIVNKRKAEFIEFHPLNRTISINGLKPPFNYALEGNKISDTSLQLGLSSDYDDKRKECKIEPSNNSGSQVASQ 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g00019 393 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 152 - -
Mepo4g00019 393 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mepo4g00019 393 Gene3D - 14 73 IPR036879 GO:0003677|GO:0046983
Mepo4g00019 393 CDD MADS_MEF2_like 2 71 IPR033896 GO:0000977|GO:0045944
Mepo4g00019 393 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mepo4g00019 393 FunFam MADS-box transcription factor MADS-MC 13 84 - -
Mepo4g00019 393 Pfam K-box region 92 146 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mepo4g00019 393 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mepo4g00019 393 Coils Coil 305 325 - -
Mepo4g00019 393 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mepo4g00019 393 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mepo4g00019 393 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mepo4g00019 393 SUPERFAMILY SRF-like 2 71 IPR036879 GO:0003677|GO:0046983
Mepo4g00019 393 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mepo4g00019 393 MobiDBLite consensus disorder prediction 374 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g00019 Mepo-Chr4 520827 525735 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g00019 1 146 MADS-box Gene Family AT5G13790 51.007 5.85e-41 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mepo4g00019 K-box 2.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g00019 - - lang:109353632 207.608
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g00019 4 520827 525735 Mepo4g00019 4 520827 525735 ECH