Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g08012 ATGAATGCCACCGAAGAAGAGGAAGCTCCACCTCACCAACAACCCTCCGATTCCCCACCTCCTCCTCCGCCGTCGAACCTCTCAGTTAATGCCGACGCCGATATGCACGACGCCGTCGTTATTGGAGGTGAGAACAATGATACCGCCGTAAACATCACCGAGGAGGTTGCTGTTGACGACGTGGCGTCGGCTGAGGGCGGTGAAGGCCAAGTGCATGTGATGGAAACTGCTTCTTACGGTGTTGGGGATGGTGTGCAAGATGAAGAAGAAATTGCTTTGGAGGAGAAGGGGACTGAGAATGTCGAAGTGGAAGAGGTTCAAGTTAGGGTTGATAACTCAGATGAAGCTCCTTTGATCGGAGAAGAAGAAGGAGACAAAGACAACGCGGAGAAGAAGGAAGAAGAAGACGAGAATGAAAAACAAGGAGAAGAAATTCAAGATGAAGGTGAACAACCGCAGCAACATGAAGACGATGAAGAACAATTGCAGGAGCAAGAAGACGACGATGAAGATGATAAAGAGGCCGATGAGGAGATGGAGGTGGCGGAGGACGAGCCAAGTCCGAGTGTGAGTGCTGGGAAAAAGAAGCGTGGGAATGGGAAGAATTCTAAATCAAGTGGGAGAGTTCCTTCAAAGAAAAAGATGGAAGAGGACGTTTGTTTCATTTGCTTTGATGGGGGTGACCTTGTGCTTTGTGACCGAAGGGGTTGCCCCAAGGCCTACCACCCTTCTTGCGTTAATCGCGACGAGGCCTTCTTCCAAACCAAGGGAAAGTGGAATTGCGGTTGGCATCTTTGCAGCAACTGTGAGAAGAATGCACACTACTTGTGCTATACATGTACATTCTCTTTGTGCAAGGGTTGTATCAAAGATGCTGTTATGTTATGTGTTAGGGGAAACAAGGGGTTTTGCGAGACATGCATGAGAACTGTAATGTTGATTGAACAGAATGAGGAGGGAAACAACATGGCACAGGTTGACTTTAATGACAAAAATAGTTGGGAGTACCTTTTCAAGGATTACTATGTAGATCTAAAAGGAAAGCTATCTCTAACATTTGATGAACTCGCTCAAGCTAAAAACCCTTGGAAGGGTTCTGGTAAGCTTGCTTCTAAAGAGGAATCACCAGATGAACTTTTTGATGCCACAAATGATAGAGGATCAGATTCAGATAGCCCTTATGAGAATGTAGATTTGAGTCGATCTAAGAAAAGAAAGCCCAAGAAACGGGCAAAGTCTCGTTCCAAAGAAGGGAAATCATATAGTGCGTCATCTACAGAAGAAAGTTCTGAGTGGGCTTCAAAGGAGCTTTTGGAGTTTGTCATGCACATGAGAAATGGAGATAAATCTATGTTGCCGCAGTTTGATGTGCATGCTCTTTTGCTAGAATATATTAAAATAAATAAACTTCGAGATCCTCGCCGAAAAAGTCAAATCGTTTGTGATGCGAGGCTTCAAAATTTGTTTGGTAAGCCAAGAGTTGGACATTTTGAAATGTTAAAACTTCTTGAATCCCATTTCCTTGTAAAAGAGGATTCACAAGCTGAAGATCACCAGGGGAGTGTTGTCGATACTGAAATTAGTCATCTGGAGGGTGATGGTGATGATGATACATATATTAAAGTTGGAAAGGATAAGAAACGTAAAAGTCGTAAAAAGGGTGATGAGAGAGGACTTCAATCAAATATTGATGAATATGCAGCCATTGATAATCATAATATTAATTTAATTTATCTAAGACGCAACTTAGTGGAAGATCTACTTGAAGATACAGATCAGTTTCATGACAGCGTTGTTGGTTCTTTTGTGAGAATAAGAATTTCTGGTAGTGGTCAAAAGCAAGACTTGTATAGGCTGGTGCAGGTTGCAGGTACATGCAAAACAGCAGAGCCATATAAAGTTGGTAAAAAGATGACAGATATCTTGCTAGAAATCTTAAATTTAAACAAGACAGAGATTGTATCAATGGATATCATCTCAAATCAGGAGTTCACAGAGGATGAGTGCAAGCGCCTCCGCCAAAGCATAAAATGCGGCCTCATTAATCGGATGACCGTGGGTGACATTCAGGACAAAGCATTGACACTTCAGGCAGTTAGAGTAAAGGATTGGCTAGAAACAGAGATAGTGCGGCTAAGCCACCTTCGTGATAGAGCTAGTGAGAATGGACGCAGAAAAGAGCTCAGAGAATGTGTAGAGAAATTGCAGCTTCTGAAAACCCCTGAAGAACGGCAACGTAGATTGGAGGAAATTCCAGAAATACATGTGGATCCAAAGATGGATCCAAGTTATGAGTCTGACGAAGGAGATGAAATGGAGGATAAAAGACAAGAAAACTTCATGAGACCTAGAGGGTCGAGTGCGTTTGGAAGGAAGGGGAGAGAAATTGCTTCGCCTAGAAGTGGTTCCATTTCGAGTGATTCTTGGAGTGGAACAAGGAACTATTCTCACATGAATCAGGAACTCAGCAGAAACTTGTCTAATAAGGGATTTTCAGTCAAAGGTGATGATGTTTCTAATGCCACTGAGCTTTTAAATGATGCTCAATTTCACCAGGGAAGAGATAGGGAATCACAACTATCTAATAGTTGGGATAGGCAAAAGCTACTGTCTTCAAGCTTGGAGAATGGTGCTAAAAGTACCCGGCCATTGGTAGCCTCCGAGTCTTTTTCAAATACTGTATCAGAAGCTGCCACAGCACCATCTTCTGGCGGATTAACAGCTCCGGCTGTGAAAATTAATGAAACTGAAAAGATGTGGCATTATCAGGATCCATCTGGAAAAGTTCAGGGACCATTTTCCATGGTGCAACTTCGCAAATGGAATAATACGGGATACTTCCCTGCTGATTTGAGGATTTGGAAAACCAGCGAGAGACAAGATGAATCTATACTCTTAACAGATGTCTTAGCAGGGAAATTTTCTATAGAACCATCCGCGGTGGATAAAACTCCTCCTAAGGCTCAAAATCACTCATCCTCATTCTCCAGGATGTCTCCTTTGGCGGCTCAAGGTTTAGCAAGTAAAACATCCCCTTTGGCAGTTGAGGTCCCTAAAAATCCTGGAAATGGTTGGGGTTCTGGTGCCGGTGTCAAAAATGAATCAACAAGTCTCCCTTCGCCTACTCCCCAAACTGCTTCAGTTGGGTCCATGGGGCATGCTTTTGAAAACAAATGGTCGCCAACACCTGTCCAGATGGCTGGGTCTGTTTTGGGAAATTCGTTCCCAAACAGTCTTGGAGGTTTTCAGACCTCTGTGGCAGTCAACTCACACCCTGGTATAACTGCAGATACTACTCAAGTGCATCTTCAAGCAACAGCTGCAAATATGCAAAACCAGGCTGCGAGTATCCATAATTCTCGTGCTGAAGCTCAAGGGTGGGGTCAGTCTGTGGTTCCAAAGCCAGAATCACAGGCCTGGGGAGGTACACCATCTCAAAGAGTAGAGGTGAATAATTCTGGAACCTTGCCTGCCCAGCAAGCTTCCCATGGTCTATGGGGTGATGCTTCTTCTGTTCAGAACTCTGCCTCATTTAGCACTGGAAATCCAACTGGGAGTTTACCCGCACATGGATTTCCAGGCATGACTGCACCAGGTAATCAAGTAAACACCATGGTCCCACCACCACCCAATATGTCATGGGGCATGAACATGCCTGGAAATCAGAATACTAGCTTGGGTGGGGCTATACCTACCAATATGAATGTTAACTGGACGCCTGCACAAGCGCCAGCACCTGGAAATGCAACTCCAGGATGGGCAGCTCCTACCCAGGGGCTACCTCAGGTAAATGCAAATGCAGGTAGCTGGGTAGCACCTGGTCAAGGTCATCCACATGTAAATAATGCTAGTGCAGGTTGGGCTGTGCCTGGTCAAGGGCCAGCACCTGGAAATGCCAATCCTTCTTGGGCTGCATCTGCTGGGAACCCAGGCATGTGGGGAAACGGGCAAAGTCATAACGGAGAGAGGTTTCACAACCAAGGGGATCGTGGTACCCGTGGTGGAGATTCTGGTCGTGGAGGTAAATCTTGGAACCGGCAGTCATCATTTAGAAGCGGAAGCAGAGGGGGTTCTAGGCCTCCTAGTGGGGGGCAAAGAGGAATCTGCAGGTATTATGAGAGTGGAAATTGCAGGAAAGGAGCTTCCTGTGATTATCAACACAACTAA 4167 0.4502 MNATEEEEAPPHQQPSDSPPPPPPSNLSVNADADMHDAVVIGGENNDTAVNITEEVAVDDVASAEGGEGQVHVMETASYGVGDGVQDEEEIALEEKGTENVEVEEVQVRVDNSDEAPLIGEEEGDKDNAEKKEEEDENEKQGEEIQDEGEQPQQHEDDEEQLQEQEDDDEDDKEADEEMEVAEDEPSPSVSAGKKKRGNGKNSKSSGRVPSKKKMEEDVCFICFDGGDLVLCDRRGCPKAYHPSCVNRDEAFFQTKGKWNCGWHLCSNCEKNAHYLCYTCTFSLCKGCIKDAVMLCVRGNKGFCETCMRTVMLIEQNEEGNNMAQVDFNDKNSWEYLFKDYYVDLKGKLSLTFDELAQAKNPWKGSGKLASKEESPDELFDATNDRGSDSDSPYENVDLSRSKKRKPKKRAKSRSKEGKSYSASSTEESSEWASKELLEFVMHMRNGDKSMLPQFDVHALLLEYIKINKLRDPRRKSQIVCDARLQNLFGKPRVGHFEMLKLLESHFLVKEDSQAEDHQGSVVDTEISHLEGDGDDDTYIKVGKDKKRKSRKKGDERGLQSNIDEYAAIDNHNINLIYLRRNLVEDLLEDTDQFHDSVVGSFVRIRISGSGQKQDLYRLVQVAGTCKTAEPYKVGKKMTDILLEILNLNKTEIVSMDIISNQEFTEDECKRLRQSIKCGLINRMTVGDIQDKALTLQAVRVKDWLETEIVRLSHLRDRASENGRRKELRECVEKLQLLKTPEERQRRLEEIPEIHVDPKMDPSYESDEGDEMEDKRQENFMRPRGSSAFGRKGREIASPRSGSISSDSWSGTRNYSHMNQELSRNLSNKGFSVKGDDVSNATELLNDAQFHQGRDRESQLSNSWDRQKLLSSSLENGAKSTRPLVASESFSNTVSEAATAPSSGGLTAPAVKINETEKMWHYQDPSGKVQGPFSMVQLRKWNNTGYFPADLRIWKTSERQDESILLTDVLAGKFSIEPSAVDKTPPKAQNHSSSFSRMSPLAAQGLASKTSPLAVEVPKNPGNGWGSGAGVKNESTSLPSPTPQTASVGSMGHAFENKWSPTPVQMAGSVLGNSFPNSLGGFQTSVAVNSHPGITADTTQVHLQATAANMQNQAASIHNSRAEAQGWGQSVVPKPESQAWGGTPSQRVEVNNSGTLPAQQASHGLWGDASSVQNSASFSTGNPTGSLPAHGFPGMTAPGNQVNTMVPPPPNMSWGMNMPGNQNTSLGGAIPTNMNVNWTPAQAPAPGNATPGWAAPTQGLPQVNANAGSWVAPGQGHPHVNNASAGWAVPGQGPAPGNANPSWAASAGNPGMWGNGQSHNGERFHNQGDRGTRGGDSGRGGKSWNRQSSFRSGSRGGSRPPSGGQRGICRYYESGNCRKGASCDYQHN 1388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g08012 1388 SMART swib_2 441 512 IPR019835 -
Mepo3g08012 1388 MobiDBLite consensus disorder prediction 514 544 - -
Mepo3g08012 1388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 207 311 IPR013083 -
Mepo3g08012 1388 FunFam Zinc finger CCCH domain-containing protein 19 569 698 - -
Mepo3g08012 1388 SUPERFAMILY Plus3-like 569 697 IPR036128 GO:0003677
Mepo3g08012 1388 MobiDBLite consensus disorder prediction 743 812 - -
Mepo3g08012 1388 SUPERFAMILY FYVE/PHD zinc finger 208 264 IPR011011 -
Mepo3g08012 1388 ProSiteProfiles Zinc finger PHD-type profile. 217 283 IPR019787 -
Mepo3g08012 1388 SUPERFAMILY SWIB/MDM2 domain 429 508 IPR036885 -
Mepo3g08012 1388 SUPERFAMILY GYF domain 909 970 IPR035445 -
Mepo3g08012 1388 MobiDBLite consensus disorder prediction 122 138 - -
Mepo3g08012 1388 Pfam Plus-3 domain 573 676 IPR004343 GO:0003677
Mepo3g08012 1388 MobiDBLite consensus disorder prediction 96 111 - -
Mepo3g08012 1388 MobiDBLite consensus disorder prediction 362 426 - -
Mepo3g08012 1388 Coils Coil 119 151 - -
Mepo3g08012 1388 MobiDBLite consensus disorder prediction 370 385 - -
Mepo3g08012 1388 MobiDBLite consensus disorder prediction 1341 1359 - -
Mepo3g08012 1388 ProSiteProfiles Plus3 domain profile. 568 701 IPR004343 GO:0003677
Mepo3g08012 1388 FunFam Zinc finger CCCH domain-containing protein 19 209 309 - -
Mepo3g08012 1388 ProSiteProfiles SWIB/MDM2 domain profile. 426 509 IPR003121 -
Mepo3g08012 1388 Gene3D - 918 976 IPR035445 -
Mepo3g08012 1388 CDD PHD5_NSD 219 264 - -
Mepo3g08012 1388 MobiDBLite consensus disorder prediction 743 781 - -
Mepo3g08012 1388 MobiDBLite consensus disorder prediction 1019 1050 - -
Mepo3g08012 1388 Pfam GYF domain 920 961 IPR003169 GO:0005515
Mepo3g08012 1388 CDD GYF 917 972 IPR003169 GO:0005515
Mepo3g08012 1388 MobiDBLite consensus disorder prediction 13 27 - -
Mepo3g08012 1388 FunFam Zinc finger CCCH domain-containing protein 19 419 514 - -
Mepo3g08012 1388 CDD SWIB-MDM2_like 435 507 - -
Mepo3g08012 1388 Gene3D - 570 698 IPR036128 GO:0003677
Mepo3g08012 1388 ProSiteProfiles GYF domain profile. 917 971 IPR003169 GO:0005515
Mepo3g08012 1388 MobiDBLite consensus disorder prediction 514 557 - -
Mepo3g08012 1388 MobiDBLite consensus disorder prediction 1029 1050 - -
Mepo3g08012 1388 MobiDBLite consensus disorder prediction 1276 1367 - -
Mepo3g08012 1388 SUPERFAMILY CCCH zinc finger 1366 1388 IPR036855 GO:0046872
Mepo3g08012 1388 MobiDBLite consensus disorder prediction 63 210 - -
Mepo3g08012 1388 Pfam SWIB/MDM2 domain 434 507 IPR003121 -
Mepo3g08012 1388 SMART rtf1 568 678 IPR004343 GO:0003677
Mepo3g08012 1388 Gene3D SWIB/MDM2 domain 419 517 IPR036885 -
Mepo3g08012 1388 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 130 1388 - -
Mepo3g08012 1388 SMART gyf_5 918 973 IPR003169 GO:0005515
Mepo3g08012 1388 MobiDBLite consensus disorder prediction 139 184 - -
Mepo3g08012 1388 FunFam Zinc finger CCCH domain-containing protein 19 919 976 - -
Mepo3g08012 1388 ProSitePatterns Zinc finger PHD-type signature. 220 280 IPR019786 -
Mepo3g08012 1388 ProSiteProfiles Zinc finger C3H1-type profile. 1363 1388 IPR000571 GO:0046872
Mepo3g08012 1388 SMART PHD_3 219 265 IPR001965 -
Mepo3g08012 1388 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g08012 Mepo-Chr3 92968013 92979209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g08012 217 297 PHD Transcription Factor Family AT4G14920 37.037 4.36e-07 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Mepo3g08012 Plus-3 6.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g08012 - - aprc:113865790 1833.54