Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g08005 ATGGAGTTTGCAGTAGCAAAAGCTTTGAAACCGAGTTTAAGAAGCGAGTTTGTTTTTCAACAAACTCTCGGCGAGGAACTTTTTAGCTTCACCGCTAACACGGTGGTTGCTGGTGAAGATTTCTCCGTTGACGACCTCCTTGACTTCTCCAACGGCGGTGAAATTCTTCACCACGACGGAGATGAAGATGAAGATGAAGAAGAGAAAGAGAGTAGTTTATCTCTTTCCTCTCAATCACTCTCAAATTCCACCGACGCTTCCTTTGATTCTTCCATTTTCTCAACTGAATTACTCGTTCCCGATGATGATGACGTGGCAGGCCTAGAATGGGTTTCTCACTTTGTTGATGATTCTCTCCCAGAATTATCTCTTCTCTATCCTGTTCAAATTCAAACCAACACGTGTCCTCAACAACATGAAACTCTGCATGGAAAAACTTTTCGTTTTTCAACTGAAAAAATGAAAATTACCACAAAGACCAGAACCGTGAAGAATAGAAAACCCAACTCTCGCGTTTGGGCTCAGCGCCCGTTTTTTTCGTCTCCGTCTGTTGTTTTTGGTGCACCACCAGCGAAGAAACAGAAGAAAAAGCCCGAGGCCCAAGTGGTTGGGCTTGAAGCCCACGACGAGGGCCAGGTACAGCGGCGATGTAGTCATTGCCAGGTGCAGAAGACGCCGCAGTGGAGAACCGGTCCGATGGGTGCTAAAACCCTTTGTAACGCATGTGGGGTTAGGTATAAATCCGGTCGGCTTTTTTCGGAGTATAGACCGGCTTGTAGCCCAACTTTCAGCAGTGAAATTCATTCCAATAGCCACCGTAAAGTGTTGGAGATGAGGAAGAGGAAAGGAATGGTTGGACCGGAACCCGGTTTAACGGCTCAGACCCAAATGGTTACCACTTGCTGA 906 0.4647 MEFAVAKALKPSLRSEFVFQQTLGEELFSFTANTVVAGEDFSVDDLLDFSNGGEILHHDGDEDEDEEEKESSLSLSSQSLSNSTDASFDSSIFSTELLVPDDDDVAGLEWVSHFVDDSLPELSLLYPVQIQTNTCPQQHETLHGKTFRFSTEKMKITTKTRTVKNRKPNSRVWAQRPFFSSPSVVFGAPPAKKQKKKPEAQVVGLEAHDEGQVQRRCSHCQVQKTPQWRTGPMGAKTLCNACGVRYKSGRLFSEYRPACSPTFSSEIHSNSHRKVLEMRKRKGMVGPEPGLTAQTQMVTTC 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g08005 301 SMART GATA_3 211 265 IPR000679 GO:0006355|GO:0043565
Mepo3g08005 301 Pfam GATA zinc finger 217 250 IPR000679 GO:0006355|GO:0043565
Mepo3g08005 301 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 210 273 - -
Mepo3g08005 301 PIRSF Txn_fac_GATA_plant 20 300 IPR016679 GO:0003677|GO:0005634|GO:0045893
Mepo3g08005 301 CDD ZnF_GATA 216 273 IPR000679 GO:0006355|GO:0043565
Mepo3g08005 301 ProSitePatterns GATA-type zinc finger domain. 217 242 IPR000679 GO:0006355|GO:0043565
Mepo3g08005 301 FunFam GATA transcription factor 208 293 - -
Mepo3g08005 301 PANTHER GATA TRANSCRIPTION FACTOR 37 285 - -
Mepo3g08005 301 Gene3D - 207 283 IPR013088 GO:0006355|GO:0008270
Mepo3g08005 301 MobiDBLite consensus disorder prediction 54 84 - -
Mepo3g08005 301 ProSiteProfiles GATA-type zinc finger domain profile. 215 247 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g08005 Mepo-Chr3 92914341 92915712 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g08005 40 282 C2C2-Gata Transcription Factor Family AT4G36240 44.578 1.01e-53 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mepo3g08005 GATA 1.7e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g08005 - - gmx:100780311 318.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g08005 3 92914341 92915712 Mepo3g08005 3 92914341 92915712 ECH
Mepo3g08005 3 92914341 92915712 Mepo2g02383 2 33598081 33600440 ECH