Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g08001 ATGAAGATTCAATGTGATGTTTGTGAGAAAGCTGAGGCTACCATGTTCTGTCCTTCAGATGAAGCTGCTCTTTGCCATGGATGTGATCATACAATCCACCGTGCTAACAAGCTTGCAACCAAACACACTCGTTTTTCTCTTGTCCACCTCAACTCCAAAGACTACCCTCTTTGTGATATATGTCAAGAGAGACGTGGATATCTATTCTGCCAAGAAGACAGAGCGATTTTATGCAGAGAATGTGACCTTCCAATCCATAGAGCAAATGAACATACACAGAAACATAACAGGTTTCTTCTCTCTGGTGTGAAGCTTTCAAGCAATTCTTTAGACCCAGATTCATCATCCACCAGTATTGGCTCTGAAGCAAGAAACCACTCTAGTAGATCAAAAGCAAACATAATACCAAGATCAGTTTCCAATGAAAATGCGAGTTCTTCTTGCATGGCTGAAGACAACATGGCTAGTGACACTGGTTCTGTTTCAACAAGCAGCATTTCTGAATACTTGATTGAAACAATACCTGGTTACTGTTTTGAAGACTTTCTTGATGCTTCTTTCCCATCTAATGGTTTCTGTAAGAAGCAGAATCATTATTCGGCATTTGAGTACCAAGATATTCATGTAAACAAGTTTTTGTTTCCTCAAGTAACGTGTGTACCTCTAGCTCAGGCTGAATCAGCTCATCTAATTACTCCTACTCCTTCTAATATTAGCTCAGTGGTTGGAGTTAAAGAAATTCCAAAAGTGAACACTTCAAAATGGAGAGGTTATGGATGTACAGTTTCAGGAACTGGTGCTGCATTCATAAAAAAATCTAGACACTTTCGATGA 834 0.3933 MKIQCDVCEKAEATMFCPSDEAALCHGCDHTIHRANKLATKHTRFSLVHLNSKDYPLCDICQERRGYLFCQEDRAILCRECDLPIHRANEHTQKHNRFLLSGVKLSSNSLDPDSSSTSIGSEARNHSSRSKANIIPRSVSNENASSSCMAEDNMASDTGSVSTSSISEYLIETIPGYCFEDFLDASFPSNGFCKKQNHYSAFEYQDIHVNKFLFPQVTCVPLAQAESAHLITPTPSNISSVVGVKEIPKVNTSKWRGYGCTVSGTGAAFIKKSRHFR 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g08001 277 Gene3D Classic Zinc Finger 1 99 - -
Mepo3g08001 277 CDD Bbox1_BBX-like 5 47 - -
Mepo3g08001 277 FunFam B-box zinc finger protein 21 1 98 - -
Mepo3g08001 277 CDD Bbox1_BBX-like 57 100 - -
Mepo3g08001 277 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Mepo3g08001 277 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 220 - -
Mepo3g08001 277 MobiDBLite consensus disorder prediction 107 130 - -
Mepo3g08001 277 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Mepo3g08001 277 Pfam B-box zinc finger 54 92 IPR000315 GO:0008270
Mepo3g08001 277 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Mepo3g08001 277 SMART bboxneu5 53 100 IPR000315 GO:0008270
Mepo3g08001 277 SMART bboxneu5 4 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g08001 Mepo-Chr3 92863456 92865469 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g08001 1 206 C2C2-CO-like Transcription Factor Family AT1G75540 48.165 2.83e-61 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Mepo3g08001 zf-B_box 6.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g08001 - - tpra:123898275 454.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g08001 3 92863456 92865469 Mepo3g08001 3 92863456 92865469 ECH
Mepo3g08001 3 92863456 92865469 Mepo5g00963 5 9360167 9363046 ECH
Mepo4g01832 4 23547191 23548775 Mepo3g08001 3 92863456 92865469 PCT