Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g07999 ATGAATTCAGATATGTCGCTCTGTGAGGGTGATTGTGTACTCATGCGTTCCTCTAAACCGTCGATACCATCATACGTTGCTGTAATCGAAGAGATCAAAGCTGATTCACGAGACGTTCGTGTCCGTTGGTATTACTGGCCGGAGGAGACAAAGAAGGGTCGGCGTCATTTCCATGGCTCAAAGGAGCTTTTTCTATCTGATCATTCTGATGTTCAGAGTGTTGATACAATCTATGGAAAATGTATTGTTCACAGTTTGGAGAACTACATGAAGCTTGATGTTGTTGGTGATGATGATTTCTTCTGCCGATTCAACTACAATTCTGCTACTGGTGCTCTCACTCCCGATACAGTTCAAGTGTATTGTAAATGTGAGATGCCCTACAACCCCGATGAAGTTATGGTCCAGTGTGATCACTGCACTGATTGGTTTCATCCTGCTTGTATAGACATGACGGTGGAAGAAGCCGAAAGAATTGACAACTTCTTTTGTGAAAGTTGTTCTGTCGAAGTTCAAAAAAAGTTGCAAGGTTCTCATTCTGCTACAAGACTCACAGATACAAAGTCTGCCCTTAGCCGCCTAACTGCAGCATTTGGGTTGTCTTCATTGCAGCCTCCAACACCTTCCTTGTGCTTATTGGGACCGAGTGGGAGGGGTGGTGGTGGAAATTCTGCCATCATTGCGACCACCCCTAGCTGCCTAATTAAGACATTTGTGTTGTCTTCATTGCAGCTCCGCATCCCTCAAGCCGGGTGGATGCTAAAAGCCGTCAAAGATGAAAGTGATGATGGTGATTTTGCGCACTTGCGTCCAGCTGATCCGTTGATAACATCGTACGTGGCTAGGATCGAAGCTATCGAAATTGATTCACGAGGTGCTCTTGTGAGCATTTATGTTTGTTGGTATTACCGGCCGGAGATGGTAAAGGGTGGCCGGCGACATTTCCATGGCTCAAAGGAGCTTTTTCATTATACGTGTAATGTTCATGACATGTGA 996 0.4518 MNSDMSLCEGDCVLMRSSKPSIPSYVAVIEEIKADSRDVRVRWYYWPEETKKGRRHFHGSKELFLSDHSDVQSVDTIYGKCIVHSLENYMKLDVVGDDDFFCRFNYNSATGALTPDTVQVYCKCEMPYNPDEVMVQCDHCTDWFHPACIDMTVEEAERIDNFFCESCSVEVQKKLQGSHSATRLTDTKSALSRLTAAFGLSSLQPPTPSLCLLGPSGRGGGGNSAIIATTPSCLIKTFVLSSLQLRIPQAGWMLKAVKDESDDGDFAHLRPADPLITSYVARIEAIEIDSRGALVSIYVCWYYRPEMVKGGRRHFHGSKELFHYTCNVHDM 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g07999 331 Gene3D - 2 115 IPR043151 -
Mepo3g07999 331 Gene3D - 263 327 IPR043151 -
Mepo3g07999 331 PANTHER OS08G0421900 PROTEIN 264 324 - -
Mepo3g07999 331 ProSitePatterns Zinc finger PHD-type signature. 122 167 IPR019786 -
Mepo3g07999 331 ProSiteProfiles Zinc finger PHD-type profile. 119 170 IPR019787 -
Mepo3g07999 331 SMART BAH_4 5 117 IPR001025 GO:0003682
Mepo3g07999 331 Pfam BAH domain 9 116 IPR001025 GO:0003682
Mepo3g07999 331 SUPERFAMILY FYVE/PHD zinc finger 113 175 IPR011011 -
Mepo3g07999 331 SMART PHD_3 121 168 IPR001965 -
Mepo3g07999 331 ProSiteProfiles BAH domain profile. 259 331 IPR001025 GO:0003682
Mepo3g07999 331 Pfam PHD-finger 121 169 IPR019787 -
Mepo3g07999 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 181 IPR013083 -
Mepo3g07999 331 ProSiteProfiles BAH domain profile. 5 117 IPR001025 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g07999 Mepo-Chr3 92822931 92828492 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g07999 14 113 Core DNA Replication Machinery Family AT4G14700 30.556 3.46e-07 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mepo3g07999 BAH 3.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g07999 K25868 - mtr:11421533 326.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g07999 3 92822931 92828492 Mepo3g07999 3 92822931 92828492 ECH