Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g07998 ATGGCTAAACCAAAAGCCCCAAAGCGAAACCTAGAGTCTTACTCAGTCAAACATATGAACAAATCTGTCACAATCAAAGCTGGGGATTGTGTGCTTATGCGTCCATCTGATCCATCCAAACCCTCATACGTGGCAAAGATCGAAGGGATCGAAGCTGATTCACGAGGTGCTAACGTTAAAGTTAACGTCCGGTGGTATTACCGGCCGGAGGAGTCAATCGGTGGCCGGAGACAGTTTCACGGCTCAAAAGAGCTTTTTCTGTCAGATCATTTTGATGTTCAGAGTGCTGATACAATTGAAGGAAAGTGTATTGTTCACGGTTTCAAGAGCTACACTAAGCTTGATGCTGTTGGTAATGATGATTTCTTCTGTCGGTTTGAGTACAATTCTGCTACTGGTGCTTTCAATCCTGATAGAGTTGCAGTGTATTGTAAATGTGAGATGCCCTACAACCCTGATGATCTGATGGTTCAGTGCGAGGGCTGCAGTGACTGGTTTCATCCTGCTTGTATAGACATGACTGTGGAGGAAGCCGAAAGACTTGACCACTTCTTTTGTGAAAGTTGTTCCGTTGAAGGTCAAAAACAGTTGCAAAATTCTCATTCTGCTACAAGACTCGCAGATACAAAGGTGGATACTAAACGCCGCCGAAGGTAG 657 0.446 MAKPKAPKRNLESYSVKHMNKSVTIKAGDCVLMRPSDPSKPSYVAKIEGIEADSRGANVKVNVRWYYRPEESIGGRRQFHGSKELFLSDHFDVQSADTIEGKCIVHGFKSYTKLDAVGNDDFFCRFEYNSATGAFNPDRVAVYCKCEMPYNPDDLMVQCEGCSDWFHPACIDMTVEEAERLDHFFCESCSVEGQKQLQNSHSATRLADTKVDTKRRRR 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g07998 218 ProSiteProfiles Zinc finger PHD-type profile. 141 192 IPR019787 -
Mepo3g07998 218 PANTHER OS08G0421900 PROTEIN 5 210 - -
Mepo3g07998 218 SMART PHD_3 143 190 IPR001965 -
Mepo3g07998 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 206 IPR013083 -
Mepo3g07998 218 SUPERFAMILY FYVE/PHD zinc finger 133 195 IPR011011 -
Mepo3g07998 218 ProSitePatterns Zinc finger PHD-type signature. 144 189 IPR019786 -
Mepo3g07998 218 Gene3D - 2 135 IPR043151 -
Mepo3g07998 218 Pfam BAH domain 23 138 IPR001025 GO:0003682
Mepo3g07998 218 SMART BAH_4 23 139 IPR001025 GO:0003682
Mepo3g07998 218 ProSiteProfiles BAH domain profile. 23 139 IPR001025 GO:0003682
Mepo3g07998 218 Pfam PHD-finger 143 191 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g07998 Mepo-Chr3 92816992 92820910 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g07998 43 141 Core DNA Replication Machinery Family AT4G14700 30.303 7.94e-10 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mepo3g07998 BAH 9.9e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g07998 K25868 - gmx:100787968 416.001