Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g07969 ATGTTGCACTGTTTGAATACCACTACTAATTCCGGGAATCTAGCAACTGAGAGTTGCTCCTCTGACATAACAGTGTTGGAAAGACAAAGGGAAAGAATGAAGTGGCAACAACATCAACATCAAGGTTACTTCAACGCTGCTGCTATGTTCTGTTCTTCTCTGCAACAACAAGTTGAGAATTCTGAAGCCTCTTCTTCACTTGCTGTTTTACTGCCAACTCTTGATGTTACTTCTGCTGCTATTTCAAGAACTTTCAGCTGCCCACCTCTTCTTCCAGACCCCAAACTCATTCACTCTTCAATTCATGGGAAAGAGAAAGACAATTCTTCTAAGAAAAGAAAAGCTGAAAAACCTCATCATAATCCTAAGCTTAAGGTTGCTGGTGAATTTGAGAACAAAGACAAGAGGATCAAAATAGGTGCTGAGGAGGGCGAATCCAAGATAACCGGGAATCCCAGTACCAACAACAACAAAGAAAACTGTGTAGCAGAAGATACTTCAAACTCAAAGGAAAGTTCAAAAGTTTCTGATGTTCAAAAGACTGATTACATTCATGTTCGAGCACGTCGTGGCCAAGCCACCGACAGCCATAGCTTAGCTGAAAGAGTTAGAAGGGAAAAGATTAGTGAGAGAATGAAGTATTTGCAAGATTTAGTACCAGGATGCAACAAAATTACAGGAAAAGCTGGAATGCTTGATGAAATCATCAACTATGTTCAGTCTCTTCAAAAACAAGTTGAGTTCTTGTCAATGAAATTAGCTACTGTCAATCCAAGGCTTGATTTCAATATTGATGATCTATTTGAAAAAGAGGTGTTTCCTACTTGTGATGCAAATGCATCTTTTCAAGCAATGGGAATGTCAACAGAATTGAATAGTGACAATCCTTATCTTCAGTTCAATTCACCACAGCAATTTGTTCCATATGGTGGATTAGATGCTGGAATGAACCCTTCAGATATGGGACTTAGAAGGAGCATAAGTGCCCCTGTATCCATTCCTCAAACTTTTATTGATTCTTCTTGTTTTTCTCAGCAAATTCTACCTTCTACAACATGGGAAGGTGATTTCCAAAACCTATACAACTTGAATTTTGATCAAGCAAGAGCAACATCTTTTCCTTCTCAATCTCAGTTATTTACAGGTCTTGTTGAAGCAAACAATCTAAAGATCGAGATGTAG 1182 0.3858 MLHCLNTTTNSGNLATESCSSDITVLERQRERMKWQQHQHQGYFNAAAMFCSSLQQQVENSEASSSLAVLLPTLDVTSAAISRTFSCPPLLPDPKLIHSSIHGKEKDNSSKKRKAEKPHHNPKLKVAGEFENKDKRIKIGAEEGESKITGNPSTNNNKENCVAEDTSNSKESSKVSDVQKTDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQKQVEFLSMKLATVNPRLDFNIDDLFEKEVFPTCDANASFQAMGMSTELNSDNPYLQFNSPQQFVPYGGLDAGMNPSDMGLRRSISAPVSIPQTFIDSSCFSQQILPSTTWEGDFQNLYNLNFDQARATSFPSQSQLFTGLVEANNLKIEM 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g07969 393 MobiDBLite consensus disorder prediction 121 143 - -
Mepo3g07969 393 MobiDBLite consensus disorder prediction 147 174 - -
Mepo3g07969 393 MobiDBLite consensus disorder prediction 96 178 - -
Mepo3g07969 393 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 190 261 IPR036638 GO:0046983
Mepo3g07969 393 SMART finulus 198 248 IPR011598 GO:0046983
Mepo3g07969 393 CDD bHLH_AtBPE_like 182 267 - -
Mepo3g07969 393 MobiDBLite consensus disorder prediction 98 114 - -
Mepo3g07969 393 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 192 242 IPR011598 GO:0046983
Mepo3g07969 393 Pfam Helix-loop-helix DNA-binding domain 196 243 IPR011598 GO:0046983
Mepo3g07969 393 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 66 296 IPR024097 GO:0006355
Mepo3g07969 393 Gene3D - 189 262 IPR036638 GO:0046983
Mepo3g07969 393 FunFam Basic helix-loop-helix transcription factor 189 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g07969 Mepo-Chr3 92597955 92600832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g07969 22 275 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 46.792 9.65e-60 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mepo3g07969 HLH 2.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g07969 - - tpra:123899220 603.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g07969 3 92597955 92600832 Mepo3g07969 3 92597955 92600832 ECH
Mepo3g07969 3 92597955 92600832 Mepo5g00864 5 8421501 8424123 ECH