Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g07967 ATGCCAAAAAAGGAAATTCACTTTTATAATATTGTTTACACGGCGGAAGTTGAATACCGATGCTTTGTTGGTGGACTTGCCTGGGCCACCGACAACGAAGCTCTTGAGAAATCGTTTTCTTCCTTTGGTGAAATCGTCAAATCGAAGGTTATCACCGATCATGAAACAGGAAGATCGAGAGGATTTGGATTTGTCACATTTGCTACAGAGCAGGCGATGAAAGATGCGATCGAAGGGATGAACGACCAAGATCTTGATGGACGTAACATAACTGTGAATGAGGCTCAGAGCCGCAGCAGTGGCGGAGGCGGTGGTGGATACCGCGGAGGCGGTGGTTATGGCGGAGACGATGACTGTCGTGGAGGTGGTGGGTATGGTGGAGGTGGCAGGGGGTTATGGAGGCGGTGA 408 0.4975 MPKKEIHFYNIVYTAEVEYRCFVGGLAWATDNEALEKSFSSFGEIVKSKVITDHETGRSRGFGFVTFATEQAMKDAIEGMNDQDLDGRNITVNEAQSRSSGGGGGGYRGGGGYGGDDDCRGGGGYGGGGRGLWRR 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g07967 135 Gene3D - 13 132 IPR012677 -
Mepo3g07967 135 CDD RRM2_NsCP33_like 20 95 - -
Mepo3g07967 135 SUPERFAMILY RNA-binding domain, RBD 19 129 IPR035979 GO:0003676
Mepo3g07967 135 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 97 IPR000504 GO:0003723
Mepo3g07967 135 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 22 90 IPR000504 GO:0003723
Mepo3g07967 135 SMART rrm1_1 20 93 IPR000504 GO:0003723
Mepo3g07967 135 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 17 129 - -
Mepo3g07967 135 MobiDBLite consensus disorder prediction 91 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g07967 Mepo-Chr3 92573096 92575233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g07967 22 99 Eukaryotic Initiation Factors Gene Family AT2G23350 33.333 1.02e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g07967 - K13195 gmx:100777821 151.754