Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g07889 ATGGCTCGAGGAAAGATCCAGATCAAGAGAATAGAGAACACAACGAACCGACAAGTAACTTACTCAAAACGAAGGAATGGTCTTTTCAAGAAGGCGAATGAGCTCACTGTTCTTTGTGATGCTAAGGTTTCTATTATTATGTTTTCCAGCACTGGCAAGCTTCATGAATACATTAGCCCCTCCGCCTCAACAAAGCAGTTTTTCGATCAGTATCAGATGACTGTAGGAATTGATCTTTGGAACTCTCATTATGAGAATATGCAAGAGAACTTGAAGAAACTGAAAGATGTCAATAGGAATCTTCGCAAGGAGATTAGGCAGAGGATGGGGGAATGTCTCAATGATCTGAGCATGGAAGAGCTGAGGCTTCTTGAGGATGAAATGGACAAAGCTGCCAAGGCTATTCGTGAGCGTAAGTATAAGGTGATAACAAATCAGATTGACACCCAAAGGAAGAAGTTTAACAATGAGAGAGAGGTGCACAACAGACTCCTGCGTGACTTGGATGCAAGAGCAGAAGATCCACGTTTTGAAATGATGGACAATGGAGGGGAGTATGAGTCTGTGATTGGATTCTCAAATTTAGGTCCACGCATGTTTGCATTGAGCTTACAGCCTACTCATCCTAACCCTCATAATGGAGGAGCATCAGCTGCCTCGGATCTCACCACTTACCCTTTACTTTTTTAG 690 0.4275 MARGKIQIKRIENTTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISPSASTKQFFDQYQMTVGIDLWNSHYENMQENLKKLKDVNRNLRKEIRQRMGECLNDLSMEELRLLEDEMDKAAKAIRERKYKVITNQIDTQRKKFNNEREVHNRLLRDLDARAEDPRFEMMDNGGEYESVIGFSNLGPRMFALSLQPTHPNPHNGGASAASDLTTYPLLF 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g07889 229 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mepo3g07889 229 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Mepo3g07889 229 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mepo3g07889 229 Coils Coil 151 171 - -
Mepo3g07889 229 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Mepo3g07889 229 Pfam K-box region 82 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mepo3g07889 229 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mepo3g07889 229 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mepo3g07889 229 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mepo3g07889 229 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 166 - -
Mepo3g07889 229 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mepo3g07889 229 Coils Coil 77 111 - -
Mepo3g07889 229 Coils Coil 114 134 - -
Mepo3g07889 229 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mepo3g07889 229 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Mepo3g07889 229 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g07889 Mepo-Chr3 91897557 91902024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g07889 1 228 MADS-box Gene Family AT3G54340 56.897 1.32e-94 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mepo3g07889 K-box 7.7e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g07889 K09264 - gmx:547720 410.223