Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g07860 ATGCTGGGTGGATTTTTCCTATCAGACTCTCTGAATTCAGCCACAGTCAATCGTTATGACAGTTCCTTAGGATTGTTAACCAAGAAATTTATCAGTTTGATCAATGAGGCTAAGGATGGTACCCTTGATCTAAATAAAACTGCTGAGATCTTAAAGGTTCAAAAAAGGAGAATTTATGACATTACAAATGTTCTTGAAGGAATAGGATTGATAGAGAAAACTTCAAAGAACCATATACGGTGGAAGGGATGTGATGGACTTGAGCCACGAGAACTGGAGCGTCAAGTTAATACTCTAAAGGATGAAGTTGATAGCTTATATGCCGAGGAATTCAAACTTGACCAGTGTATAAGTGAAAGAAAGGAGCTTATTAGAAACCTGGAGGAAGGTGAAAACACCGGAAAGTACCTTTTTTTTACCAAAGAAGATATTCTTACCCTTCCATGCTTCCAGAATAAGCAACTTATTACAATCAAGGCTCCAAAAGCTAGTTTCATTGAGGTCCCAGATCCTGATGAGGAATTAGGCTTCCACCAAAGGCAGTGCAGAATGATTGTTAGAAGTGCAACTGGACCGATAAATCTGTACCTCTTGAACAAGCACGACCACAAGTTTGAGGGTGTGAGTGCTAAGCAGGCAAAGCTAGAAGATCCATCACGGAGCAGCAACGGCTGCAGAATGGACGGTGTGGGATTATTAGAAAACCAAGGTTTTCAGAAAAACCCTTATGGGAGTTTAAATTCGCTTGACTCAGAGGCTTTTGGAATTCAACAAATTACTCCTACAGATTTCGATGTTGATGGTGATTATTGGTTTCAATCAGATCCCCAAGTTGGCCTAACAGAATTGTGGCGGTAG 858 0.4044 MLGGFFLSDSLNSATVNRYDSSLGLLTKKFISLINEAKDGTLDLNKTAEILKVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGCDGLEPRELERQVNTLKDEVDSLYAEEFKLDQCISERKELIRNLEEGENTGKYLFFTKEDILTLPCFQNKQLITIKAPKASFIEVPDPDEELGFHQRQCRMIVRSATGPINLYLLNKHDHKFEGVSAKQAKLEDPSRSSNGCRMDGVGLLENQGFQKNPYGSLNSLDSEAFGIQQITPTDFDVDGDYWFQSDPQVGLTELWR 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g07860 285 SUPERFAMILY E2F-DP heterodimerization region 95 200 IPR037241 -
Mepo3g07860 285 Coils Coil 113 133 - -
Mepo3g07860 285 CDD E2F_DD 94 201 IPR032198 GO:0046983
Mepo3g07860 285 Pfam E2F transcription factor CC-MB domain 99 198 IPR032198 GO:0046983
Mepo3g07860 285 Gene3D - 13 85 IPR036388 -
Mepo3g07860 285 SMART E2F_TDP_2 18 83 IPR003316 GO:0005667|GO:0006355
Mepo3g07860 285 Pfam E2F/DP family winged-helix DNA-binding domain 20 83 IPR003316 GO:0005667|GO:0006355
Mepo3g07860 285 Gene3D - 90 201 - -
Mepo3g07860 285 FunFam E2F transcription factor 1 12 85 - -
Mepo3g07860 285 SUPERFAMILY "Winged helix" DNA-binding domain 17 81 IPR036390 -
Mepo3g07860 285 PANTHER TRANSCRIPTION FACTOR E2F 15 284 IPR015633 GO:0000978|GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g07860 Mepo-Chr3 91632585 91635174 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g07860 1 284 E2F-DP Transcription Factor Family AT1G47870 51.930 5.21e-89 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Mepo3g07860 E2F_CC-MB 4.9e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g07860 K06620 - gmx:100797301 399.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g07860 3 91632585 91635174 Mepo3g07860 3 91632585 91635174 ECH