Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g07810 ATGTCATCATCGGCGGTGAGAAACAAGAACTCCGGCGACGACGAAGGCAAACACTATCCTCCCCCACTCGCCTCTCACAACGACGTCGTTAACGACCCTACTCTCTTTTGGGACACTCTTCGTCGCTTTCACTTTCTTATGGCTACCAAGTTCATGATTCCTGTGATTGGTGGTAAGGAGCTTGATTTGCACGTTCTCTACGTGGAAGTTACAAGAAGAAGCGGTTATGAGAAGGTTGTTGCAGAGAAGAAATGGAGAGAAGTAGGTAGTGTATTTAGATTCTCATCTACTACTACAAGCGCTTCTTTTGTACTAAGAAAACACTATTTGAATCTTCTTTATCATTACGAACAAGTTCACTTCTTCAAAGTTCAGGGTCCTATTTACACCCCCTCACCAGATGCATTTTCTGGTAACAGTCCCTCGTGGAAACCTGAATTAGCCATTGTTCAATATTCACCTAAGATGGTAAATTATAGTGCTGTATCTCATGATGAAGTTGATGTAGATAATTCATTTCTTTTGGGAAAAGGAACAATAGAAGGAAAATTTGATTGTGGTTATATAGTGTCAGTGAATTTGGGTTCAGAAGTTCTCAAAGGGGTGCTTTACCATCCAGAAAAAGTGGTTTCTCCTTCATCATTGGTTACACAACACAACGGTGCCATTGAGCCATTCAATCACCAAACTCATCGATTGGGTAGGAGGAAGAGAAGAAAAAGAAAGTGGGATCCCAACTATCCAAAGCCAAATAGGAGTGGCTATAACTTTTTCTTTGCTGAAAAGCATTACAAGCTCAAAGAACTCTACCCAAACAGAGAAAGGGAGTTTACCAAAATGATTGGTCAGTCCTGGAATAGTCTCAGCCCTGAAGAAAGAATGATTTACCAAAACATTGGCTTAAGGGACAAAGAAAGGTACAAAAGAGAATTGACGGAGTACAAACAGAAAATGAAGGTTGGACAGACAGAAGAACTCGGGCGTCCATAA 990 0.4101 MSSSAVRNKNSGDDEGKHYPPPLASHNDVVNDPTLFWDTLRRFHFLMATKFMIPVIGGKELDLHVLYVEVTRRSGYEKVVAEKKWREVGSVFRFSSTTTSASFVLRKHYLNLLYHYEQVHFFKVQGPIYTPSPDAFSGNSPSWKPELAIVQYSPKMVNYSAVSHDEVDVDNSFLLGKGTIEGKFDCGYIVSVNLGSEVLKGVLYHPEKVVSPSSLVTQHNGAIEPFNHQTHRLGRRKRRKRKWDPNYPKPNRSGYNFFFAEKHYKLKELYPNREREFTKMIGQSWNSLSPEERMIYQNIGLRDKERYKRELTEYKQKMKVGQTEELGRP 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g07810 329 SUPERFAMILY HMG-box 245 318 IPR036910 -
Mepo3g07810 329 ProSiteProfiles ARID domain profile. 30 121 IPR001606 GO:0003677
Mepo3g07810 329 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 248 315 IPR009071 -
Mepo3g07810 329 Pfam ARID/BRIGHT DNA binding domain 35 117 IPR001606 GO:0003677
Mepo3g07810 329 CDD HMG-box_AtHMGB9-like 248 314 - -
Mepo3g07810 329 CDD ARID_HMGB9-like 32 117 IPR045303 GO:0003677
Mepo3g07810 329 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 8 322 - -
Mepo3g07810 329 SUPERFAMILY ARID-like 26 130 IPR036431 GO:0003677
Mepo3g07810 329 SMART bright_3 31 122 IPR001606 GO:0003677
Mepo3g07810 329 SMART ARID_2 27 117 - -
Mepo3g07810 329 SMART hmgende2 247 316 IPR009071 -
Mepo3g07810 329 Coils Coil 304 324 - -
Mepo3g07810 329 Pfam HMG (high mobility group) box 248 315 IPR009071 -
Mepo3g07810 329 Gene3D High mobility group box domain 233 327 IPR036910 -
Mepo3g07810 329 Gene3D - 24 127 IPR036431 GO:0003677
Mepo3g07810 329 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g07810 Mepo-Chr3 91212500 91214889 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g07810 2 320 ARID Transcription Factor Family AT1G76110 61.491 4.25e-131 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Mepo3g07810 ARID 7.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g07810 - - gmx:100784746 511.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g07810 3 91212500 91214889 Mepo3g07810 3 91212500 91214889 ECH