Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g07796 ATGGTTTATCTTTGTGGAGTTCACACTGACCATCATCACTATCATCAACAACAACAACAATTTCTTCATGGGCAATATGGTAACGGAAACAATGATCTTTTGAGGTATCATCCATTATCATCAAACGGGTCATTCCAATTTCCTCCACCAGTGATGATCAATGACAACACCAACAATTATAGTACTAATTTTGTTGGTGACTCTGGTTTTAATCCGTTCATTGGAAACATAAGTGGTGGTGGAGGAGCTTGTTCTAATGTAGCTTCTGATTGGTTTTTGCCTAATAACCACTATGCTTATGGATCTCGAGATTCTCTTGTTAGAAACAACCCTCCACCTCTAAACACATCAAGATCGATGGCTAAAGTTCCTAAGCATGATTATGAGAAAACCTATGAAGAGTCTGACAAGAGGATTAAAAGGTCTTCTTGTTCACTATCAAGTGACGACGATGATGCAAAGCATGAGGTTATTATTACAGGATCTACGCACAAGTGCAATATTTGTGAAAAAGAATTTAGCAGCGGACAAGCACTTGGTGGTCACAAGAGATCTCACCCTCTTAAGAAGATAGAGTTAGAAACCCCTTCCTCACCGGAGATCTCACCGGAAAAGAGGATGAAAAAGTCTTCATTTTCGCTATCAAGCGATGAAGATGATGTCAAGCATGAGGTTTCTAAGCACCAGTGCAATATTTGTGGAAAAACTTTTAAAAATGGAAAAGCATTGGGTGGTCACCGGAGATCTCACTTTATTAAGAAGAAACTTAATCATCCAGAAAATCATGTTATTCGTAAGTCTTCTTCGTCCAGCAATTATAAATCTCCTACTGAACATCATAAAGAAGATCAAGCTTATGGTAATTTTTCTTTGCCAAAATGGCAAAAGAAAGATAGAAGAGGTAGAAAGTGTATTGGTAGTGTTGAAGCGGCTGAAAATCTTTTGCTCCTTCGTTCAGATAAGTACTTTTGTGTTGGTGAGTCATCATCAAATTGGAATGGCAAGAATGAGCTTGGTGGTGATAGAAACAGTAGTGATGAGCAGCACAAGAAAGGAATATTTTTATTTGATTTGAATGAGTCGTATGCTATAGAGGACTAA 1101 0.3787 MVYLCGVHTDHHHYHQQQQQFLHGQYGNGNNDLLRYHPLSSNGSFQFPPPVMINDNTNNYSTNFVGDSGFNPFIGNISGGGGACSNVASDWFLPNNHYAYGSRDSLVRNNPPPLNTSRSMAKVPKHDYEKTYEESDKRIKRSSCSLSSDDDDAKHEVIITGSTHKCNICEKEFSSGQALGGHKRSHPLKKIELETPSSPEISPEKRMKKSSFSLSSDEDDVKHEVSKHQCNICGKTFKNGKALGGHRRSHFIKKKLNHPENHVIRKSSSSSNYKSPTEHHKEDQAYGNFSLPKWQKKDRRGRKCIGSVEAAENLLLLRSDKYFCVGESSSNWNGKNELGGDRNSSDEQHKKGIFLFDLNESYAIED 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g07796 366 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 126 360 IPR044653 GO:0003700
Mepo3g07796 366 MobiDBLite consensus disorder prediction 253 287 - -
Mepo3g07796 366 ProSiteProfiles Zinc finger C2H2 type domain profile. 164 191 IPR013087 -
Mepo3g07796 366 MobiDBLite consensus disorder prediction 109 134 - -
Mepo3g07796 366 SUPERFAMILY beta-beta-alpha zinc fingers 163 250 IPR036236 -
Mepo3g07796 366 ProSitePatterns Zinc finger C2H2 type domain signature. 166 186 IPR013087 -
Mepo3g07796 366 Gene3D Classic Zinc Finger 161 250 - -
Mepo3g07796 366 ProSiteProfiles Zinc finger C2H2 type domain profile. 228 255 IPR013087 -
Mepo3g07796 366 ProSitePatterns Zinc finger C2H2 type domain signature. 230 250 IPR013087 -
Mepo3g07796 366 MobiDBLite consensus disorder prediction 193 219 - -
Mepo3g07796 366 SMART c2h2final6 164 186 IPR013087 -
Mepo3g07796 366 SMART c2h2final6 228 250 IPR013087 -
Mepo3g07796 366 Pfam C2H2-type zinc finger 228 250 - -
Mepo3g07796 366 Pfam C2H2-type zinc finger 164 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g07796 Mepo-Chr3 91092341 91094605 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g07796 164 251 C2H2 Transcription Factor Family AT3G19580 40.860 2.93e-13 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo3g07796 zf-C2H2_6 1.5e-07 CL0361