Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g07759 ATGATGTCTTCTAGCTGGGATGGAAGTAATGACCCTGGCAGTCAGTCAGATGATAGTTTTCTGTTTGAGAGGATGCATATTGAGCCTATTTATGATGCTTTTGTATGTCCTTTGACGAAGCAAGTTATGCGTGATCCCGTTACTTTAGAAAACGGACAAACTTATGAACGTGAAGCAATTGAAAAATGGTTCAAGGAGTGCAGGGAGAGTGGACGGAAATTGGTTTGCCCATTGACTCTTCGAGAATTAAAAAGCACCGAAATGAATCCTAGTATGGCTTTGCGGAACACCATTGAAGAGTGGACTACCAGGAATGAAGCTGCACAGCTGGATATGGCTCGCCGGTCATTGAATACGGGCAGTCCCGAGAAGGAAACCCTTCAGGCCTTGAGGTATGTCCAGCACATCTGTCAAAGAAGTCGGTCGAATAAACATGTTGTCCGCAGTGCAGGGCTTATACAAATGATTGTTGATATGCTGAAGAGTAGCAGCCGTAAAGTTCGTTGTAGAGCTCTTGAAACCCTTAGAATTGTGGTCGAGGGAGACGATGAGAATAAGGAACTGTTGGCTGAAGGAGACACTGTGCGTACGGTAGTAAAATTCCTCTCTCACGAGCTTTCTAAAGAAAGAGAGGAAGCTGTCTCTTTGCTTTATGAACTCTCGAAATCTGAAACCCTTTGTGAGAAGATTGGTTCAATCAACGGATCTATTCTCATATTAGTTGGAATGACAAGCAGCAAATCAGAAGACCTTTCCACCGTTGAGAAGGCTGATAAAACATTAGAGAATCTGGAGAAATATGAGAATAATGTGCGGCAGATGGCTGAAAATGGTAGATTGCAGCCTCTTCTAACCCATCTTCTTGAAGGGCCACCAGAAACCAAACTGTCCATGGCTGGAATCCTTGGTGAGCTGGTTTTGGACAATGACGTTAAAGTCCTTGTTGCCAGAACTGTGGGCTCATCCTTGATCGATATCATGAAAAGTGGCAATATGCAGTCAAGAGAAGCTGCACTAAAGGCACTAAACCAGATATCATCGTGTGAGCCAAGCGCAAAGGTTTTAATAGAGGCTGGAATACTTTCCCCACTTGTCAACGACCTTTTTGCGGTGGGCCCTCATCTTCTTCCCACGCGACTAAAAGAGGTCTCTGCTACAATTCTTGCCAGTGTTGTGAATTCGGGAGAAGACTTTGATTCGATTCCACTTGGACCTGATCACCAAACTCTGGTCTCAGAGGATATAGTTCATAAGCTACTCCATCTTATAAGCAACACTGGTCCAGCAATTGAGTGCAAACTTCTACAAGTTCTTGTTGGACTTGCTAGTTCTCCAACTACAGTGCTGAGTCTAGTTTCTGCTATCAAAAGCTCTGGTGCCACTATCAGTCTAGTTCAATTCATTGAGGCACCACAGAAAGATCTTCGTTTAGCTTCCATAAAACTTCTTCAAAATTTGTCTCCTCACATGGGCCCGGAATTAGCCGATGCACTTCGTGGTTCTGTGGGACAGCTTAGTAGCCTAGTTAAAGTCATATCAGAAAATATCGGAATCACTGAAGAGCAGGCAGCTGCTGTTGGCCTCTTAGCTGATCTACCGGAGAGAGATTTAGGCCTCACGAGACAGCTGCTGGATGAAGGCGCTTTTTTTATGGCGATATCAAAAGTGATTGCCATCAGGCAAGGAGAGATTAGAGGCACTCGGTTCGTGACACCATTTCTTGAAGGGCTTATGAAGATTGTTGCAAGGATTACATATGTCTTGGCTGATGAGCCTGATGCTGTCGCGCTTTGCCGTGATCAAAATCTTGCTGCACTCTTCATTGAACTGCTTCAGACCAATGGACTTGATAATGTACAGATGGTTTCTGCTATAGCTTTGGAGAATTTATCTCTAGAATCAAAGAATTTAACCAAATTGCCTGAGACGCCAGAACCGGCTTTTTGTGTTTCATTCTTTTCGTGTTTCAGCAAACCGCCAGTGATTACCGGATTATGTAGGATCCACCGAGGGAAGTGTTCTTTAAAAGAAACATTTTGTCTCTACGAAGGACAGGCAGTCCTTAAATTAGTAGCTCTACTGGACCACACAAATGTGAATGTGGTTGAGGCAGCACTTGCAGCCTTATGTACTGTAATAGATGATGGAGTAGATATTGAGCAAGGTGTAATGGTTTTGTGCGAGGCAGAAGGAGTGAAGCCAATACTTGATGTGTTGCTCGAGAAACGGACAGACAATTTGAGGAGGAGGGCAGTTTGGGCAGTGGAGAGACTGTTGCGAACAGACGATATAGCCTACGAAGTGTCTGGAGATCAAAATGTGAGTACTGCACTTGTGGACGCTTTCCAACACGGTGACTATCGAACTAGGCAGATTGCTGAGCGTGCCCTCAAGCATGTTGATAAGATACCAAACTTCTCAGGAATCTTTCCAAACATGGGATGA 2445 0.4434 MMSSSWDGSNDPGSQSDDSFLFERMHIEPIYDAFVCPLTKQVMRDPVTLENGQTYEREAIEKWFKECRESGRKLVCPLTLRELKSTEMNPSMALRNTIEEWTTRNEAAQLDMARRSLNTGSPEKETLQALRYVQHICQRSRSNKHVVRSAGLIQMIVDMLKSSSRKVRCRALETLRIVVEGDDENKELLAEGDTVRTVVKFLSHELSKEREEAVSLLYELSKSETLCEKIGSINGSILILVGMTSSKSEDLSTVEKADKTLENLEKYENNVRQMAENGRLQPLLTHLLEGPPETKLSMAGILGELVLDNDVKVLVARTVGSSLIDIMKSGNMQSREAALKALNQISSCEPSAKVLIEAGILSPLVNDLFAVGPHLLPTRLKEVSATILASVVNSGEDFDSIPLGPDHQTLVSEDIVHKLLHLISNTGPAIECKLLQVLVGLASSPTTVLSLVSAIKSSGATISLVQFIEAPQKDLRLASIKLLQNLSPHMGPELADALRGSVGQLSSLVKVISENIGITEEQAAAVGLLADLPERDLGLTRQLLDEGAFFMAISKVIAIRQGEIRGTRFVTPFLEGLMKIVARITYVLADEPDAVALCRDQNLAALFIELLQTNGLDNVQMVSAIALENLSLESKNLTKLPETPEPAFCVSFFSCFSKPPVITGLCRIHRGKCSLKETFCLYEGQAVLKLVALLDHTNVNVVEAALAALCTVIDDGVDIEQGVMVLCEAEGVKPILDVLLEKRTDNLRRRAVWAVERLLRTDDIAYEVSGDQNVSTALVDAFQHGDYRTRQIAERALKHVDKIPNFSGIFPNMG 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g07759 814 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 30 110 IPR013083 -
Mepo3g07759 814 SMART arm_5 348 393 IPR000225 GO:0005515
Mepo3g07759 814 SMART arm_5 673 714 IPR000225 GO:0005515
Mepo3g07759 814 SMART arm_5 718 760 IPR000225 GO:0005515
Mepo3g07759 814 SMART arm_5 182 222 IPR000225 GO:0005515
Mepo3g07759 814 SMART arm_5 591 632 IPR000225 GO:0005515
Mepo3g07759 814 SMART arm_5 308 347 IPR000225 GO:0005515
Mepo3g07759 814 SMART arm_5 140 180 IPR000225 GO:0005515
Mepo3g07759 814 SMART arm_5 266 307 IPR000225 GO:0005515
Mepo3g07759 814 SUPERFAMILY ARM repeat 116 368 IPR016024 -
Mepo3g07759 814 Gene3D - 576 804 IPR011989 -
Mepo3g07759 814 SUPERFAMILY ARM repeat 403 799 IPR016024 -
Mepo3g07759 814 ProSiteProfiles U-box domain profile. 29 108 IPR003613 GO:0004842|GO:0016567
Mepo3g07759 814 Gene3D - 116 320 IPR011989 -
Mepo3g07759 814 SMART Ubox_2 33 101 IPR003613 GO:0004842|GO:0016567
Mepo3g07759 814 Coils Coil 257 277 - -
Mepo3g07759 814 CDD RING-Ubox_PUB 31 88 IPR045210 -
Mepo3g07759 814 Gene3D - 321 487 IPR011989 -
Mepo3g07759 814 SUPERFAMILY RING/U-box 25 111 - -
Mepo3g07759 814 Pfam U-box domain 32 106 IPR003613 GO:0004842|GO:0016567
Mepo3g07759 814 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 17 810 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g07759 Mepo-Chr3 90774148 90779216 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g07759 3 814 U-box Gene Family AT1G76390 65.602 0.0 1041
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g07759 - - gmx:100789746 1415.98