Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g07698 ATGTGCGACTCTAGGTTCATAATGCTTCGTGGTTCTTCCGGTTTCTATTCTTATGCAATTTATGAGCACTTGGAGGATTGGCCTGCTTTTAACCTTGATGAAACAAGAATTGCTTTCAAGCTTAGAAAAGACAAATTCCATTATATGGCAATGGCAGATAATAGACAGAGGAATATGCCTCTTCCAGATGACAGAGTGGCACCAAGAGGGAAAGCACTTGCATATCCAGAAGCAGTTCTACTTGTCAATCCTATAGAACCAGAACTTAAAGGAGAGGTGGATGATAAGTACCAATATTCATGTGACAACAAAGATAGCCAAGTTCATGGATGGATTTGCATGGATCCTGCTGTTGGATTCTGGCTTATTACTCCTAGCAATGAATTTCGATCTGGTGGACCTGTCAAACAAAACTTAACTTCACACGTCGGACCTACCACACTTGCTGTGTTTCTCAGTGCTCATTATAGTGGAGAGGATTTAGTGCCTAAATTCAAAGCTGGTGAGGCATGGAAAAAAGTTTTTGGTCCAGTTTTTATCTATGTCAATTCTCCATATGATGGAAGTGACCCTATTAAACTATGGGATGATGCTAAACTGCAGATGTTAATGGAAGTTCAAAGCTGGCCCTACAATTTTCCTGAATCAGATGATTTCCCAAAATGGGATGAACGTGGCAATGTTTGTGGCAGACTATTGGTTAAAGAGAGGTATATAGATGATGACTATTTATCAGCAAAAGTTGCTTATGTTGGCTTAGCTCCACCAGGAGATGTTGGATCCTGGCAAAGAGAATGCAAGAATTATCAGTTTTGGGCTAAAGCAGACGATGATGGCTATTTCTCCATTAGCAATATACATGTTGGAGACTATAATTTTTATGCATGGGTACCTGGTTTTATTGGTGACTATAAATATGATGTAGTAATTAGTATAACAAAAGGCTGTGACATAGACATTGGTGATCTTGTTTATGAGCCACCAAGAGATGGCCCAACATTGTGGGAAATAGGCATCCCTGATCGCTCAGCCGCTGAGTTCTATGTTCCTGATCCAAATCCCAAATATATCAACAAACTTTATGTTAATCATCCTGACAAGTTTAGGCAATATGGTATATGGGAGAGATATGCAGAACTATACCCTGACAAAGATTTAATCTACACAATCGGTGTTAGTGACTTCACCAAAGATTGGTTCTTTGCTCAAGTTACCAGGAAGAAAGAAGATAATACATATCAAGGAACCACATGGCAAATCAAGTTTAACCTTGATAATGTAAATAAAAAAGGTAGCTATAAACTTCGAGTGGCTTTGGCATCAGCTACATATTCAGAACTTCAGGTACGAGTCAATGATCCCAAAACAAATCGCCCTTTATTTTCAAGTGGGTTGATAGGAAAGGACAACTCAATTGCTAGGCATGGAATTCATGGACTTTATTGGCTTTACAATGTGAACATACCAGGTTCTTTACTTGTTGAAGGAGATAACAATACCATCTTTTTGACACAAGCTAGAGGCAATGGTCCATTTCAGGCCATTATGTATGATTATATTCGTTTGGAAGGTCCAGCGACTTCTAGTTTCAGATATCCCACTAGTTGA 1608 0.3899 MCDSRFIMLRGSSGFYSYAIYEHLEDWPAFNLDETRIAFKLRKDKFHYMAMADNRQRNMPLPDDRVAPRGKALAYPEAVLLVNPIEPELKGEVDDKYQYSCDNKDSQVHGWICMDPAVGFWLITPSNEFRSGGPVKQNLTSHVGPTTLAVFLSAHYSGEDLVPKFKAGEAWKKVFGPVFIYVNSPYDGSDPIKLWDDAKLQMLMEVQSWPYNFPESDDFPKWDERGNVCGRLLVKERYIDDDYLSAKVAYVGLAPPGDVGSWQRECKNYQFWAKADDDGYFSISNIHVGDYNFYAWVPGFIGDYKYDVVISITKGCDIDIGDLVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYVNHPDKFRQYGIWERYAELYPDKDLIYTIGVSDFTKDWFFAQVTRKKEDNTYQGTTWQIKFNLDNVNKKGSYKLRVALASATYSELQVRVNDPKTNRPLFSSGLIGKDNSIARHGIHGLYWLYNVNIPGSLLVEGDNNTIFLTQARGNGPFQAIMYDYIRLEGPATSSFRYPTS 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g07698 535 Gene3D - 225 317 - -
Mepo3g07698 535 CDD RGL4_M 224 323 IPR029413 -
Mepo3g07698 535 SUPERFAMILY Galactose-binding domain-like 330 523 IPR008979 -
Mepo3g07698 535 Pfam Polysaccharide lyase family 4, domain II 248 319 IPR029413 -
Mepo3g07698 535 CDD RGL4_N 3 184 - -
Mepo3g07698 535 SUPERFAMILY Starch-binding domain-like 263 319 IPR013784 GO:0030246
Mepo3g07698 535 CDD RGL4_C 335 523 - -
Mepo3g07698 535 Pfam Rhamnogalacturonate lyase family 3 93 IPR010325 -
Mepo3g07698 535 Gene3D - 331 523 - -
Mepo3g07698 535 FunFam Rhamnogalacturonate lyase B 221 320 - -
Mepo3g07698 535 SUPERFAMILY Galactose mutarotase-like 29 184 IPR011013 GO:0003824|GO:0005975|GO:0030246
Mepo3g07698 535 Gene3D - 3 201 IPR014718 GO:0030246
Mepo3g07698 535 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 2 526 - -
Mepo3g07698 535 Pfam Polysaccharide lyase family 4, domain III 333 522 IPR029411 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g07698 Mepo-Chr3 90333817 90337998 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g07698 11 526 Polysaccharide Lyase AT1G09890 72.008 0.0 798
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g07698 K18195 - gmx:100814721 1025