Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g07697 ATGGACTTCCACAATCTTTTCCTGTTTTTGATGTTACAATTCATCTTGGTTCTTGGGGTGCGATTGGATATTCAAGAAAACTATGTGGTAATGGATAATGACATAGTCCAAGTCAATATATCAAACCCAGAAGGATGTGTCACTGGAATTCAATATAATGGACTTGATAATTTGCTCGAAATTATTAACCATGAATCTGATAGAGGGTATTGGGATATTGTTTGGGATCAGGGTGGGGTAAAAAGAACAAAAAAAGGTGCAAAGGGAAAGGGTAAATTGGACAGGCTGGAAACCACAAATATGAGGGTGATAATGGAAAGTGAAGAACAAGTAGAGCTATCTTTCACTAGAACATGGAATTTATCTCTTGAAGGAAAGCTTGCGCCACTCAATATTGATAAAAGGTTTATAATGCTTCGCGGTTCCTCTGGATTCTACACGTATGCCATTTACGATCATTTGAAGGAATGGCCTGCCTTTGATCTTGACAATACTAGGGTTGCTTTCAAGCTTAGGAAAGACAAGTTCAATTACATGGCTATAGCTGACGATAGACAAAGATTTATGCCTCTGCCCGATGATCGTTTACCGGGAAGAGGCCAAGTTTTGGCTTACCCAGAGGCTGTCCGCCTTGTCAATCCGATGGAGCCAGAGTTCAAAGGAGAGGTGGATGATAAGTATGAGTATGCATGTGAGAGTCGAAGTAACCAAGTTCATGGTTGGATTTCTATTAATTCATCAGAAGATTCCACTGGATGCTGGCTAATTACTCCTAGCTATGAATTCAGATCTGCTGGTCCCTTAAAACAATATCTTGGATCCCACCTTGGGCCCACCATGCTCTCTGTATTTCATAGCACACATTATTCAGGGGCAGATCTTATCATGAAATTTGGAGAAAATGAGCCATGGAAGAAAGTCTTTGGTCCAATATTCATATACCTTAATTCCATCTCTGATGGGTTTAGCCCGATCAAGCTTTGGGAGGACGCCAAACAACAGATGGTGAATGAAGTTGAAAGCTGGCCCTATACATTTCCTGCTTCTGAGGACTTTCTCTCATCTGCCCAACGAGGTAAAGTTGAAGGTAGATTGCTTGTCCGAGATAGGTACATCAGGGATGCATTCGTCCCTGTCGGTGGTGCTTATGTGGGATTAGCAGCCCCAGGAGCTGTTGGATCTTGGCAAAGAGAATACAAGGGCTATCAATTTTGGACCATTACCGATGATAAAGGCTATTTCTCAATAATTAATGTACGTCCTGGTGACTATAATTTGTATTCGTGGGTCACTGGATTCATCGGTGATTATCAATATAACAATACCATTGACATAACCTCAGGTTCTGAAATTTATGTGGGTGAGCTTGTTTATGAGCCACCAAGAGATGGCCCTACATTGTGGGAAATAGGCATCCCTGATCGCTCAGCTGCTGAGTTCTATGTTCCTGATCCAAATCCCTTGTACGTGAACAGACTTTATCTCAACCATTCAGACAGGTTTAGGCAATATGGCTTGTGGGAGAGATATGCTGAACTGTATCCAAATGAAGACCTAGTTTACACTGTTGGCATTAGTGATTACAAAAAAGATTGGTTTTTTGCTCAGGTCACCAGGAAGAAAGAAAACAACACTTACCAAGGAACCACATGGCAAATTAATTTCAATCTTGATTCTGTGAATACAAACGGAACCTACAAATTGCGACTAGCTTTGGCATCTGTACATTATGCGGAGCTACAGGCATAA 1749 0.4128 MDFHNLFLFLMLQFILVLGVRLDIQENYVVMDNDIVQVNISNPEGCVTGIQYNGLDNLLEIINHESDRGYWDIVWDQGGVKRTKKGAKGKGKLDRLETTNMRVIMESEEQVELSFTRTWNLSLEGKLAPLNIDKRFIMLRGSSGFYTYAIYDHLKEWPAFDLDNTRVAFKLRKDKFNYMAIADDRQRFMPLPDDRLPGRGQVLAYPEAVRLVNPMEPEFKGEVDDKYEYACESRSNQVHGWISINSSEDSTGCWLITPSYEFRSAGPLKQYLGSHLGPTMLSVFHSTHYSGADLIMKFGENEPWKKVFGPIFIYLNSISDGFSPIKLWEDAKQQMVNEVESWPYTFPASEDFLSSAQRGKVEGRLLVRDRYIRDAFVPVGGAYVGLAAPGAVGSWQREYKGYQFWTITDDKGYFSIINVRPGDYNLYSWVTGFIGDYQYNNTIDITSGSEIYVGELVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPLYVNRLYLNHSDRFRQYGLWERYAELYPNEDLVYTVGISDYKKDWFFAQVTRKKENNTYQGTTWQINFNLDSVNTNGTYKLRLALASVHYAELQA 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g07697 582 SUPERFAMILY Starch-binding domain-like 355 454 IPR013784 GO:0030246
Mepo3g07697 582 Pfam Polysaccharide lyase family 4, domain II 381 451 IPR029413 -
Mepo3g07697 582 SUPERFAMILY Galactose-binding domain-like 463 576 IPR008979 -
Mepo3g07697 582 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 26 581 - -
Mepo3g07697 582 Gene3D - 354 453 - -
Mepo3g07697 582 Pfam Rhamnogalacturonate lyase family 24 223 IPR010325 -
Mepo3g07697 582 CDD RGL4_N 27 317 - -
Mepo3g07697 582 CDD RGL4_M 357 456 IPR029413 -
Mepo3g07697 582 Pfam Polysaccharide lyase family 4, domain III 466 581 IPR029411 -
Mepo3g07697 582 Gene3D - 464 581 - -
Mepo3g07697 582 Gene3D - 21 308 IPR014718 GO:0030246
Mepo3g07697 582 FunFam Rhamnogalacturonate lyase B 354 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g07697 Mepo-Chr3 90319833 90323983 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g07697 20 581 Polysaccharide Lyase AT1G09890 63.588 0.0 753
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g07697 K18195 - gmx:100786488 1004.59