Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g07633 ATGGAAGCTCAAGAGTTTTTCCAAACCACAAACAATGTAAACACTGCTGTTTCCGACCACTTCATCGTTGAAGATCTCTTTGATTTCTCTAATAAGGATGTTGCCATTGAGGACCCCACTTTCGAAGAATCTCCTCCTACCAACTCTAATGATTCTCCTCTTCTTGAAACCAACCCCACTTCCAATTTTTTCACCGACAATTCCTGCCAGAATTCTGCCGACGGCCCTTTCTCCGGCGAACTCTCCGTTCCGTATGATGATCTTGCGGAGCTAGAATGGGTGTCCAAATTTGCGGAGGAATCATTTTCAAGCGAGGACCTACATAAGCTACAATTGATATCTGGATTGAAGGCACCAAATAACGTTGCATCAAAACCCCATGAAAAACCCAACCCAACAATACACCCTCAAGTGCCTGTCCCGGCGAAAGCCCGTAGTAAGCGGTCACGTGTACCTCCATGCAACTGGACTTCGCGCCTTCTAGTTCTCTCTCCAACCACGACCACCACCACATCTTCTCACTCTGACACCATGGCTCCACCAAAAAAAACCTCTCCGAGAAAGAGAGACCTCAGTGATGGAGGGGAGGGTCGCAAGTGTCTTCATTGCGCCACTGATAAGACTCCACAGTGGCGCACTGGGCCATTAGGCCCAAAGACACTATGCAATGCGTGTGGAGTTAGGTACAAGTCAGGTCGACTCGTACCTGAGTATAGGCCTGCAGCAAGCCCAACATTTGTGTTGACCAAGCACTCCAACTCACATCGAAAGGTGCAAGAGCTCCGACGCCAGAAGGAGATGATGAGGGCCCAACAGCAACAATTGTTGCAACTACAACATCATCACAGCATTATGTTTGAAGGACCATCCAACGGTGATGATTACTTGATTCATCAACACGTGGGACCCGATTTCACGCACCTCATGTAG 930 0.4839 MEAQEFFQTTNNVNTAVSDHFIVEDLFDFSNKDVAIEDPTFEESPPTNSNDSPLLETNPTSNFFTDNSCQNSADGPFSGELSVPYDDLAELEWVSKFAEESFSSEDLHKLQLISGLKAPNNVASKPHEKPNPTIHPQVPVPAKARSKRSRVPPCNWTSRLLVLSPTTTTTTSSHSDTMAPPKKTSPRKRDLSDGGEGRKCLHCATDKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVQELRRQKEMMRAQQQQLLQLQHHHSIMFEGPSNGDDYLIHQHVGPDFTHLM 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g07633 309 MobiDBLite consensus disorder prediction 163 180 - -
Mepo3g07633 309 FunFam GATA transcription factor 191 275 - -
Mepo3g07633 309 PIRSF Txn_fac_GATA_plant 1 288 IPR016679 GO:0003677|GO:0005634|GO:0045893
Mepo3g07633 309 Pfam GATA zinc finger 200 233 IPR000679 GO:0006355|GO:0043565
Mepo3g07633 309 MobiDBLite consensus disorder prediction 38 60 - -
Mepo3g07633 309 SMART GATA_3 194 244 IPR000679 GO:0006355|GO:0043565
Mepo3g07633 309 PANTHER GATA TRANSCRIPTION FACTOR 12 274 - -
Mepo3g07633 309 ProSiteProfiles GATA-type zinc finger domain profile. 194 230 IPR000679 GO:0006355|GO:0043565
Mepo3g07633 309 MobiDBLite consensus disorder prediction 163 198 - -
Mepo3g07633 309 MobiDBLite consensus disorder prediction 125 151 - -
Mepo3g07633 309 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 195 257 - -
Mepo3g07633 309 MobiDBLite consensus disorder prediction 181 198 - -
Mepo3g07633 309 MobiDBLite consensus disorder prediction 42 60 - -
Mepo3g07633 309 Coils Coil 258 281 - -
Mepo3g07633 309 Gene3D - 195 276 IPR013088 GO:0006355|GO:0008270
Mepo3g07633 309 CDD ZnF_GATA 199 246 IPR000679 GO:0006355|GO:0043565
Mepo3g07633 309 ProSitePatterns GATA-type zinc finger domain. 200 225 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g07633 Mepo-Chr3 89597819 89600266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g07633 2 309 C2C2-Gata Transcription Factor Family AT5G25830 50.291 1.79e-90 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mepo3g07633 GATA 1.5e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g07633 - - mtr:11432019 572.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g07633 3 89597819 89600266 Mepo3g07633 3 89597819 89600266 ECH