Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g07621 ATGAATAGTACTATTGAACAACCTCATAAATCAGAAACTAAGAGTAGCTCAAATTCATCACCACCACCACCATCATCATCATCACAATCCCAACAAATAAAAGGCATAAGAGACTCAAGCAAGCATCCAGTATACCGTGGTGTCCGAATGCGAAATTGGGGAAAATGGGTGTCCGAAATTCGTGAGCCTAAGAAAAAGTCCCGAATATGGCTCGGCACATTTCCCACACCGGAAATGGCAGCTCGAGCACACGATGTAGCTGCTCTTAGTATAAAAGGAACTGCCGCCATTCTCAACTTCCCTGAGTTAGCAAACTTGCTTCCTCGACCGGCTTCACTTGCTCCCCGCGATGTTCAAGCAGCCGCTACCAAAGCCGCTCACATGGAGTTTCCATCTTCAACAACTTCATTTGAATTGAGTGAGATAATTGAGCTTCCTCGTTTGGGAAACGTTGGAGATTTTGGAAAGGAGTTTGTGTTTATGGATTCCATTGATACTTCGTGGATGTTTCAGCCTCCTTGCTTGCACACCATGGAAGATGTGATTTGGAGTGACATTTATAATAATTATAGCTAG 576 0.4392 MNSTIEQPHKSETKSSSNSSPPPPSSSSQSQQIKGIRDSSKHPVYRGVRMRNWGKWVSEIREPKKKSRIWLGTFPTPEMAARAHDVAALSIKGTAAILNFPELANLLPRPASLAPRDVQAAATKAAHMEFPSSTTSFELSEIIELPRLGNVGDFGKEFVFMDSIDTSWMFQPPCLHTMEDVIWSDIYNNYS 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g07621 191 MobiDBLite consensus disorder prediction 1 37 - -
Mepo3g07621 191 SUPERFAMILY DNA-binding domain 44 102 IPR016177 GO:0003677
Mepo3g07621 191 PRINTS Ethylene responsive element binding protein signature 67 83 IPR001471 GO:0003700|GO:0006355
Mepo3g07621 191 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700|GO:0006355
Mepo3g07621 191 ProSiteProfiles AP2/ERF domain profile. 44 101 IPR001471 GO:0003700|GO:0006355
Mepo3g07621 191 SMART rav1_2 44 107 IPR001471 GO:0003700|GO:0006355
Mepo3g07621 191 CDD AP2 45 103 IPR001471 GO:0003700|GO:0006355
Mepo3g07621 191 MobiDBLite consensus disorder prediction 1 41 - -
Mepo3g07621 191 Pfam AP2 domain 43 93 IPR001471 GO:0003700|GO:0006355
Mepo3g07621 191 FunFam Ethylene-responsive transcription factor 2 43 102 - -
Mepo3g07621 191 Gene3D AP2/ERF domain 44 102 IPR036955 GO:0003700|GO:0006355
Mepo3g07621 191 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 13 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g07621 Mepo-Chr3 89496684 89497876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g07621 15 190 AP2-EREBP Transcription Factor Family AT5G11590 54.067 4.03e-66 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mepo3g07621 AP2 4.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g07621 K09286 - gmx:100813069 214.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g07621 3 89496684 89497876 Mepo3g07621 3 89496684 89497876 ECH
Mepo3g07621 3 89496684 89497876 Mepo4g00891 4 11559970 11560850 PCT