Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g07588 ATGTCTTCAGCCACCACCAAGAAGATCACTCTCAAGAGTTCTGATGGCGAAACCTTCAAAATTTCCAAGATGGTGGCACTTGAATCGCAGGTGATCAAGCATATGATCGAGGAGGATTGTGCCAATGACGCAATCCCTCTTCAGGACGTCACCGCAAATATTTTGGAGATGGTGATTGAATACTGTAAGAAGCATGTGGATGCAAGTTCCGATGAAAAACCTTCAGAAGAAGATCTTGAGAATTGGGATGCTGAATTTGTGAAGGTTGACCAGGGTACGCTTTTCGAACTCATTCTTGCTGCAAACTATTTGGAAATCAAGAGTTTGCTGGATCTAACCTGCCAGACTGTGGCGGACATGATCAAAGGGAAGACACCAGAGGAAATTCGAGAGACTTTTAACATCGAGAATGATTTCACTCCGCAGGAAGAGGAAGATGTTCGCAGGGAAAATCAATGGGCATTTGAATGA 471 0.4395 MSSATTKKITLKSSDGETFKISKMVALESQVIKHMIEEDCANDAIPLQDVTANILEMVIEYCKKHVDASSDEKPSEEDLENWDAEFVKVDQGTLFELILAANYLEIKSLLDLTCQTVADMIKGKTPEEIRETFNIENDFTPQEEEDVRRENQWAFE 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g07588 156 Gene3D Potassium Channel Kv1.1; Chain A 2 156 IPR011333 -
Mepo3g07588 156 CDD BTB_POZ_SKP1 8 121 - -
Mepo3g07588 156 Pfam Skp1 family, tetramerisation domain 7 66 IPR016073 GO:0006511
Mepo3g07588 156 SMART skp1_3 6 106 IPR001232 GO:0006511
Mepo3g07588 156 SUPERFAMILY Skp1 dimerisation domain-like 79 154 IPR036296 GO:0006511
Mepo3g07588 156 FunFam SKP1-like protein 5 2 156 - -
Mepo3g07588 156 PIRSF SCF_Skp 1 156 IPR016897 GO:0006511
Mepo3g07588 156 PANTHER SKP1 5 153 IPR016897 GO:0006511
Mepo3g07588 156 Pfam Skp1 family, dimerisation domain 107 154 IPR016072 GO:0006511
Mepo3g07588 156 SUPERFAMILY POZ domain 7 68 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g07588 Mepo-Chr3 89189371 89189841 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Mepo3g07588 Skp1_POZ 1.2e-24 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g07588 K03094 - gmx:100527683 244.588