Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g07533 ATGACTCGCGTGTACATTGGAAATCTCGATTCAAGAATTTCTGAGAGGGATCTTGAAGATGATTTCCATGTTTTTGGAGTTATACGAAGTGTGTGGGTTGCAAGGAGGCCTCCTGGTTATGCTTTCATTGACTTCGATGACCGCAGAGATGCGCTTGATGCTATTCGTGAATTAGATGGTAAAAATGGTTGGAGGGTAGAGCTTTCTCACAACTCTAAAACTGGAGGTGGAGGGGGAGGCAGAGGTGGTGGTGGTGGTGGTCGTGGTCGGTCTGGTGGGGGTGGTTCTGATTTGAAATGTTATGAGTGTGGTGAACCTGGTCATTTTGCCCGCGAGTGTAATTCTTCTCGTGGTGGCTCTGGAAGACGTCGGAGCCGCAGTCCACCTCGATTTCGCAGGAGCCCAAGTTACGGGCGAAGGAGTTACAGTCCTCGTGAGCGGTCCCCTAGGCGGCGCAGCCCTTCTCCTCGTCGACGCAGCCCTTCACCTCGCCGGCGCAGCTATAGCAGGTCACCACCTCCTTACCGTGGACGTGAGGACGCAACACATGCTAACGGGTTAGGTTCCATCACTCTGCCTGGATTTATCTTGGTATCACTAGATGGTTGCCTGTTTTAA 618 0.521 MTRVYIGNLDSRISERDLEDDFHVFGVIRSVWVARRPPGYAFIDFDDRRDALDAIRELDGKNGWRVELSHNSKTGGGGGGRGGGGGGRGRSGGGGSDLKCYECGEPGHFARECNSSRGGSGRRRSRSPPRFRRSPSYGRRSYSPRERSPRRRSPSPRRRSPSPRRRSYSRSPPPYRGREDATHANGLGSITLPGFILVSLDGCLF 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g07533 205 FunFam Serine/arginine-rich splicing factor 7 2 69 - -
Mepo3g07533 205 CDD RRM_SRSF3_like 3 71 - -
Mepo3g07533 205 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
Mepo3g07533 205 SUPERFAMILY Retrovirus zinc finger-like domains 90 118 IPR036875 GO:0003676|GO:0008270
Mepo3g07533 205 Gene3D - 99 165 - -
Mepo3g07533 205 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 173 - -
Mepo3g07533 205 SMART rrm1_1 3 69 IPR000504 GO:0003723
Mepo3g07533 205 Pfam Zinc knuckle 99 114 IPR001878 GO:0003676|GO:0008270
Mepo3g07533 205 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Mepo3g07533 205 FunFam Serine/arginine-rich splicing factor RSZ22A 96 157 - -
Mepo3g07533 205 SMART c2hcfinal6 99 115 IPR001878 GO:0003676|GO:0008270
Mepo3g07533 205 MobiDBLite consensus disorder prediction 66 94 - -
Mepo3g07533 205 MobiDBLite consensus disorder prediction 151 165 - -
Mepo3g07533 205 ProSiteProfiles Zinc finger CCHC-type profile. 99 113 IPR001878 GO:0003676|GO:0008270
Mepo3g07533 205 MobiDBLite consensus disorder prediction 111 188 - -
Mepo3g07533 205 SUPERFAMILY RNA-binding domain, RBD 2 96 IPR035979 GO:0003676
Mepo3g07533 205 Gene3D - 1 98 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g07533 Mepo-Chr3 88703806 88705875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g07533 2 60 Eukaryotic Initiation Factors Gene Family AT2G36660 38.095 3.62e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g07533 K12896 - mtr:112419871 224.172