Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g07525 ATGGATGAATATTCTGGTAAGAGAGCCAATGATGGGGTGATAGTCCCTAGAAAGGGGATGAGCACCATGTTTAAAGATGCTGCCACTACCCGAGATCGAAATGGTCAAGTATGTAGCCGCCTTGGTTGCAGCAGCAAAGTCAACTCTTCTAAAGGTGCTCAAATTGGTTCTTCTGAAAAGGGCAAATCTTTGAGGCCTTCATTTCGGTTCTCATCAAATGGTAAGGAAACAATTGGTAGCTCTTCAAAAACTTTCTCCGGGAGTACTAGCCCAGGAAAACCCCATAGAAAGCCTCAGAAAAAGTTATCATCTCAGATAGAGACAGATTCATCTGAAACTAATAGTGTACAAGATGAACCAGAAGTTTTAAAGCTCGCACCTCCACAAAAAAACCAGAGGGGTCTTCAAGCCGAAGGGGAAAACACAGATTCTAGAAATGGGGTGCTGATGGAAGTAGGAAGTTCTAGTTTAGCCTCTAATACAAGATCTAGGAGGAACTTTCATCCAAAACCTGGATTACGTAGTCAAGAAATTCAAAGCACCGGTCCAGGGACACGTGCTGGTACCAGTAGGTATGGGTTAAGGAACCTCAAATGCAACTCCATTTCTGATGTCATGCCTGTCGGTTGTACACCATCTGATTCAACCCTAAACAAAAAGAAGGATGTGATAAAAAAGAGAAATTGTGAAGGAGAAAGTAGTTCTACAGCTAGAGGCAAAAAAATTAATGGGCCGTCAATTGAAGGACGGAATTCTGTATCCAGAAATGGCATATCTATCTCTGATTCAAGAATATCTAGAAATGCCCCTCATAGGGACAGGGCAGACAGCAACATAGCGTCTGTTAGAACACGAAGATCAATTGGCGGTCATGGTAGGGGAAGGCTTTCTGGCCAAGGAAATGCTAATCCTGTGGCCCCTAATCAGTCCCTTATCATGGTACCTTCCTTTTCTCATTCTGGAAATCTTAATGCTCCTGGTGTACAACATCATAATTCTCTGGAGACTCCTTCAAGTCCAAGCTCTTACAGTGGAGCAGGTACTAGTAGCGAGGAGTTGTACGGTGTTATGCCAACGTCTCCTACAGAATACGGGCTCACTCATTCTCTAATAAATCGGGATAGCTTTCGACGACGCTACAACATGGATGGTATTGCAGAGGTACTTTTGGCACTTGAGAGGATTGAACAAGATGTCGAGCTAACACACGAGCAAATTCACTTGTTGGAGTCCAACTTGTTCCTTACTGGACTGAACTTCTATGATCAGCATAGAGATATGCGATTGGACATCGATAATATGTCATATGAGGAATTACTGGCTCTGGAAGAAAGGATGGGTACTGTGAGCACCGCTGTAACAGAGGAAGATCTATCAGAATGCGTAAAGAGAAGTTTCTATCAATCCTCACCCTCAGACAATGTAACCAAGTGTTGCAATGAGAATAAGGATGATATCAAATGCTGCATCTGCCAGGAGGAGTATGTGGAGGAAGATGAAGTGGGGAGACTACTATGCGAGCACAAATATCATGTTGTTTGCATACAGCAGTGGCTACGGCTAAAGAATTGGTGTCCTATTTGCAAAGCATCAGTGACACCGCCAAGTTCACCGTCGTCCCACTAG 1626 0.4367 MDEYSGKRANDGVIVPRKGMSTMFKDAATTRDRNGQVCSRLGCSSKVNSSKGAQIGSSEKGKSLRPSFRFSSNGKETIGSSSKTFSGSTSPGKPHRKPQKKLSSQIETDSSETNSVQDEPEVLKLAPPQKNQRGLQAEGENTDSRNGVLMEVGSSSLASNTRSRRNFHPKPGLRSQEIQSTGPGTRAGTSRYGLRNLKCNSISDVMPVGCTPSDSTLNKKKDVIKKRNCEGESSSTARGKKINGPSIEGRNSVSRNGISISDSRISRNAPHRDRADSNIASVRTRRSIGGHGRGRLSGQGNANPVAPNQSLIMVPSFSHSGNLNAPGVQHHNSLETPSSPSSYSGAGTSSEELYGVMPTSPTEYGLTHSLINRDSFRRRYNMDGIAEVLLALERIEQDVELTHEQIHLLESNLFLTGLNFYDQHRDMRLDIDNMSYEELLALEERMGTVSTAVTEEDLSECVKRSFYQSSPSDNVTKCCNENKDDIKCCICQEEYVEEDEVGRLLCEHKYHVVCIQQWLRLKNWCPICKASVTPPSSPSSH 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g07525 541 ProSiteProfiles Zinc finger RING-type profile. 488 529 IPR001841 -
Mepo3g07525 541 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 449 535 IPR013083 -
Mepo3g07525 541 SMART ring_2 488 528 IPR001841 -
Mepo3g07525 541 MobiDBLite consensus disorder prediction 227 350 - -
Mepo3g07525 541 MobiDBLite consensus disorder prediction 266 280 - -
Mepo3g07525 541 FunFam E3 ubiquitin-protein ligase arkadia 450 534 - -
Mepo3g07525 541 MobiDBLite consensus disorder prediction 27 93 - -
Mepo3g07525 541 MobiDBLite consensus disorder prediction 301 350 - -
Mepo3g07525 541 MobiDBLite consensus disorder prediction 173 187 - -
Mepo3g07525 541 MobiDBLite consensus disorder prediction 235 265 - -
Mepo3g07525 541 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 74 532 IPR045191 GO:0061630
Mepo3g07525 541 MobiDBLite consensus disorder prediction 1 191 - -
Mepo3g07525 541 Pfam Ring finger domain 487 529 IPR001841 -
Mepo3g07525 541 MobiDBLite consensus disorder prediction 134 166 - -
Mepo3g07525 541 SUPERFAMILY RING/U-box 481 535 - -
Mepo3g07525 541 Coils Coil 392 412 - -
Mepo3g07525 541 MobiDBLite consensus disorder prediction 104 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g07525 Mepo-Chr3 88593742 88596385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g07525 385 529 C3H Transcription Factor Family AT2G15530 45.890 1.82e-33 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g07525 - - gmx:100787213 780.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g00740 4 9864530 9869370 Mepo3g07525 3 88593742 88596385 PCT