Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g07498 ATGGGAGAAGTGGCAGTAATGCACTCCGAGCCTCTTCAATTTGAGTGCAATGACAGGAAGCTTATCACGGAGAAAGATGTGCATAATCTACCCTCAAATGAAGAGCACATGCATGGCGAAAAGTCTAGCCAATCACCAGACCACAAAAAGATCAATGACTTGCGAGAGAGAAGATATATGGAGTATGGATGTCAACATTACCGGAGAAGGTGTCGCATTAGGGCCCCTTGTTGCAATGAGATATTTGATTGTCGCCATTGTCACAATGAGGCAAAAAACAGCATCAACATCGATCAGAAGCATAGACACGACATTCCCCGCCATCAAGTCAAACAGGTGATATGTTCACTCTGTGAGACTGAACAAGAGGTTCAGCAGAACTGTATCAATTGCGGTGTGTGCATGGGCAAGTATTTTTGCGGGACATGTAAGCTCTTTGATGATGATGTATCTAAGCAGCAGTACCATTGCAGTGGTTGTGGAATTTGCAGAACTGGAGGGTCTGAAAATTTCTTCCACTGCTACAAGTGTGGTTGTTGCTACTCAACTTTGTTGAAAAACGGTCACCCTTGCGTGGAAGGAGCAATGCATCAAGATTGTCCTGTTTGTTTTGAGTATTTGTTTGAATCTGTCAACGATGTCTCCGTGTTGCATTGCGGCCATACAATCCATAAGAGTTGTCTGAATGAAATGAGGGAACATTTTCAGTATGCATGCCCTTTGTGCTCAAAGTCAGTTTGTGATATGTCAAAGGTTTGGGAAAAAATTGACTTGGAACTGGCTGCTACACCGATGCCTGAACCATATCTTAATAAAATGGTTTGGATCCTTTGCAATGATTGCGGCGAAAATTCTCACGTTCAGTTTCATCTTGTCGCACAAAAGTGCTTGAACTGCAAATCTTATAACACAAGACAGACCAGAGGCTGA 930 0.4301 MGEVAVMHSEPLQFECNDRKLITEKDVHNLPSNEEHMHGEKSSQSPDHKKINDLRERRYMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAKNSINIDQKHRHDIPRHQVKQVICSLCETEQEVQQNCINCGVCMGKYFCGTCKLFDDDVSKQQYHCSGCGICRTGGSENFFHCYKCGCCYSTLLKNGHPCVEGAMHQDCPVCFEYLFESVNDVSVLHCGHTIHKSCLNEMREHFQYACPLCSKSVCDMSKVWEKIDLELAATPMPEPYLNKMVWILCNDCGENSHVQFHLVAQKCLNCKSYNTRQTRG 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g07498 309 SUPERFAMILY Zinc hairpin stack 136 193 IPR037275 -
Mepo3g07498 309 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 40 308 - -
Mepo3g07498 309 Pfam CHY zinc finger 64 145 IPR008913 GO:0008270
Mepo3g07498 309 ProSiteProfiles Zinc finger RING-type profile. 200 243 IPR001841 -
Mepo3g07498 309 Gene3D - 271 309 - -
Mepo3g07498 309 SUPERFAMILY RING/U-box 198 246 - -
Mepo3g07498 309 ProSiteProfiles Zinc finger CTCHY-type profile. 135 199 IPR017921 -
Mepo3g07498 309 CDD RING-H2_Pirh2-like 199 243 - -
Mepo3g07498 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 192 261 IPR013083 -
Mepo3g07498 309 MobiDBLite consensus disorder prediction 31 52 - -
Mepo3g07498 309 SMART ring_2 200 242 IPR001841 -
Mepo3g07498 309 ProSiteProfiles Zinc finger CHY-type profile. 57 133 IPR008913 GO:0008270
Mepo3g07498 309 Pfam Ring finger domain 199 242 IPR001841 -
Mepo3g07498 309 Pfam Zinc-ribbon 247 305 IPR039512 -
Mepo3g07498 309 SUPERFAMILY CHY zinc finger-like 61 135 IPR037274 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g07498 Mepo-Chr3 88316344 88320486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g07498 54 309 C2H2 Transcription Factor Family AT3G18290 38.550 6.25e-52 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g07498 K10144 - gmx:100812023 624.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g07498 3 88316344 88320486 Mepo3g07498 3 88316344 88320486 ECH
Mepo4g00699 4 9460069 9463729 Mepo3g07498 3 88316344 88320486 PCT
Mepo3g07498 3 88316344 88320486 Mepo4g00762 4 10090879 10094704 PCT