Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g07494 ATGCAGTTCAAATCATCACAATCATCATTTCGAGATCGTACACATGAATTCCACACCGTTGCAGAGAGATTGAAGAAATCAGTTTCATCTGGATCAGGTCCAAACGGACCCACCACCAGCGCTCCTTCTTCCTCTTCTCCTTCTTCTTCCAGATCCGACGATCCTCGATCCGCCGTTGCAATTCAATCCGAGTTTAATCGAAGAGCTTCCAAAATCGGTTATGGAATTCACCAAACCTCTCAGAAACTTTCCAAGCTCGCCAAATTGGCGAAAAGGACTTCGGTTTTTGATGATCCAACGATGGAGATTCAAGAATTAACAAGTGTTATTAAGCAAGATATTACCGCTCTTAACTCTGCGGTTGTGGATCTTCAATTAGTCAGTAATTCTAGAAATGAGAGTGGAAATGTTTCTACCGACACCACTAGTCATTCAACTACTGTCGTCGATGACCTAAAGACGCGATTGATGAGCACTACCAAGGAATTTAAAGATGTTCTTACCATGCGTACTGAGAATTTGAAAGTGCATGAGAATAGAAGACAATTGTTTTCGGCGAATGCTTCTAAGGATACTGCAAATCCTTTCATACGCCAACGTCCGTTAGCTACAAAGACAGCTGCTAGTACTTCTAGTGCCCCTGCACCTCCATGGGCTAGTGGGAAGCAGGTGGATGGAGAGAGTCAACCGTTGTTGCAGCAGCAGCAGCAGCAGCAGCAAGTAGTTCCATTGCAGGACAGTTACATGCAAAGCAGAGCTGAAGCTCTTCAAAATGTTGAGTCCACTATTCATGAGCTCAGCAACATCTTTAATCAACTAGCAACACTTGTCTCCCAGCAAGGGGAGGTTGCCATAAGGATTGATGAGAACATGGATGATACCCTGGCAAATGTAGAGGGGGCACAAGGGGCTTTGTTGAAGTATTTGAATAGCATATCTTCTAATAGGTGGCTGATGATCAAGATTTTCTTTGTATTGATGTTTTTCCTCATGGTTTTCTTATTTTTTGTGGCATAG 1017 0.4326 MQFKSSQSSFRDRTHEFHTVAERLKKSVSSGSGPNGPTTSAPSSSSPSSSRSDDPRSAVAIQSEFNRRASKIGYGIHQTSQKLSKLAKLAKRTSVFDDPTMEIQELTSVIKQDITALNSAVVDLQLVSNSRNESGNVSTDTTSHSTTVVDDLKTRLMSTTKEFKDVLTMRTENLKVHENRRQLFSANASKDTANPFIRQRPLATKTAASTSSAPAPPWASGKQVDGESQPLLQQQQQQQQVVPLQDSYMQSRAEALQNVESTIHELSNIFNQLATLVSQQGEVAIRIDENMDDTLANVEGAQGALLKYLNSISSNRWLMIKIFFVLMFFLMVFLFFVA 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g07494 338 CDD SNARE_syntaxin5 249 322 - -
Mepo3g07494 338 MobiDBLite consensus disorder prediction 9 23 - -
Mepo3g07494 338 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 8 26 IPR021538 -
Mepo3g07494 338 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 246 308 IPR000727 -
Mepo3g07494 338 ProSitePatterns Syntaxin / epimorphin family signature. 252 291 IPR006012 GO:0005484|GO:0006886|GO:0016020
Mepo3g07494 338 Pfam SNARE domain 283 334 IPR000727 -
Mepo3g07494 338 MobiDBLite consensus disorder prediction 203 236 - -
Mepo3g07494 338 PANTHER SYNTAXIN 62 326 IPR045242 -
Mepo3g07494 338 MobiDBLite consensus disorder prediction 25 57 - -
Mepo3g07494 338 SUPERFAMILY t-snare proteins 63 301 IPR010989 GO:0016020|GO:0016192
Mepo3g07494 338 SMART tSNARE_6 241 308 IPR000727 -
Mepo3g07494 338 MobiDBLite consensus disorder prediction 203 217 - -
Mepo3g07494 338 MobiDBLite consensus disorder prediction 1 57 - -
Mepo3g07494 338 Gene3D - 60 301 - -
Mepo3g07494 338 FunFam Syntaxin-32 like 59 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g07494 Mepo-Chr3 88271953 88276095 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g07494 1 338 SNARE and Associated Proteins AT3G24350 61.995 4.11e-143 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g07494 K08490 - gmx:100777961 462.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g07494 3 88271953 88276095 Mepo3g07494 3 88271953 88276095 ECH