Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g07485 ATGGCAAACACTACTCACCATGTCATCATCGATATAGCAACAACTTCTGAAACAACCTCTCCTCCTCGTCATCAAATACATGATGTTGATGATGGTAGATTGCGTGTTTCACATCAAACTTCAAATTATTCATCATCACCACGACGGCGAGGAGGAGGACGTAGTAATAGGAGTCCATTGAATTCAGGGTTTTGGATTTCTTTTGAATTTATTTTTACATTATCTCAAATTATTGCTTCCGTTATTGTTCTTAATTCTTCAAGAGATGAGCATCCACGTACTCCATTGTTCGCTTGGATAATTGGTTATGCTTCCGGTTGCTTTGTTTCCCTTCCTTTGCTCCTTTGGCGATATTTTGTTAGAGACCAAAATTCATCTCAAACCAATTCAAGAACTGATGATCCTTCTGGGACACTTCTTTCTAATTCAACTACAGTTCATGGCGAAGATGATGTTCCTGTTGTTGCTGCTGCTTCATCCAGAAATAATCGAGCTTCGTCACGGTCGGTTAATGGAAGACCGAAGCTACTCATGGAATACTTCAAAACCGCCTTAGATTTATTTTTTGCAATATGGTTTGTTATTGGAAATGTGTGGATTTTCACAGGACATGCATCCGCTAACGAAGCTCCTAATTTGTATCGGTTATGTATAGTGTTTCTTACTTTTAGCTGTATCAGTTATGCAATGCCCTTCATTCTATGTTTAACAATATGTTGCTGTCTTCCTTGTATAATATCCACTCTTGGGGTCACAGAGGATCTGGCACAAACCCGAGGCGCAACCTCTGAATCCATTAATGCTTTACCAACTCACAAATTCAAAACAATGAGAAGTAAAAGCAGGGATGAATCTGATAACACTCCAGTTGTTATTGAAGGTGGAATCGTGGCTGAAGGAACTGAAAAGGAACGCATGATCTCTGGAGAAGATGCTGTTTGCTGCATATGCATAGCAAACTATGAAAATGACGATGAGTTAAGAGAATTGACATGTTCACATCTTTTCCACAAAGAGTGTGTGGACAAGTGGTTGAAGATAAATGCATTATGCCCCCTTTGCAAGAGTGAAATTGGCGAGAATGCAATAGGGCCAGTTATTGAGGAAAATGCCAACCAACAAAGGGGTGAAAGCAGGGTTGAGAATGCTCTTGCCAGTACCTCGTCATAA 1170 0.4 MANTTHHVIIDIATTSETTSPPRHQIHDVDDGRLRVSHQTSNYSSSPRRRGGGRSNRSPLNSGFWISFEFIFTLSQIIASVIVLNSSRDEHPRTPLFAWIIGYASGCFVSLPLLLWRYFVRDQNSSQTNSRTDDPSGTLLSNSTTVHGEDDVPVVAAASSRNNRASSRSVNGRPKLLMEYFKTALDLFFAIWFVIGNVWIFTGHASANEAPNLYRLCIVFLTFSCISYAMPFILCLTICCCLPCIISTLGVTEDLAQTRGATSESINALPTHKFKTMRSKSRDESDNTPVVIEGGIVAEGTEKERMISGEDAVCCICIANYENDDELRELTCSHLFHKECVDKWLKINALCPLCKSEIGENAIGPVIEENANQQRGESRVENALASTSS 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g07485 389 MobiDBLite consensus disorder prediction 369 389 - -
Mepo3g07485 389 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 5 358 - -
Mepo3g07485 389 Pfam Ring finger domain 314 355 IPR001841 -
Mepo3g07485 389 FunFam E3 ubiquitin-protein ligase 297 363 - -
Mepo3g07485 389 SUPERFAMILY RING/U-box 306 360 - -
Mepo3g07485 389 MobiDBLite consensus disorder prediction 125 145 - -
Mepo3g07485 389 MobiDBLite consensus disorder prediction 12 31 - -
Mepo3g07485 389 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 296 362 IPR013083 -
Mepo3g07485 389 MobiDBLite consensus disorder prediction 38 57 - -
Mepo3g07485 389 ProSiteProfiles Zinc finger RING-type profile. 314 355 IPR001841 -
Mepo3g07485 389 SMART ring_2 314 354 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g07485 Mepo-Chr3 88192867 88195648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g07485 24 362 C3H Transcription Factor Family AT1G80400 49.153 9.04e-124 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g07485 - - gmx:100775815 473.396