Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g07471 ATGTCTCAAACTAACTGGGAAGCTGATAAGATGTTAGATGTTTACATCCATGATTACCTTGTTAAGAGAGATTTGAAAGCTTCTGCTCAGGCTTTTCAAGCTGAGGGAAAAGTATCATCTGACCCTGTTGCTATTGATGCTCCTGGAGGTTTTCTGTTTGAGTGGTGGTCAGTTTTCTGGGATATTTTCATTGCAAGGACTAATGAGAAGCACTCCGAGGTGGCTGCATCATATATAGAGACTCAATTAATCAAGGCAAGGGAACAACAGCAACAGCAACAACAACAGCAGCAGCCTCAACCTCAGCAGTCACCGCATGTGCAGCAGCAGCAGCAACAACACATGCAGATGCAACAACTTCTGATGCAGAGGCATGCACAGCAGCAGCAACAACAGCAGCAGCATCAGCAACAGCCACAATCGCAGCCGCAGCAGCCACAACCACAACCACAACAACAACAAAATAGAGATAGGGCTCATCTCTTAAATGGTAGCGCAAATGGGTTAGCTGGAAACCCGGCAACTGCGAATGCAATAGCAACAAAGATGTATGAGGAAAGGTTAAAAGGTCCCCCACAGAGGGATTCTTTGGATGACGCAGCAATGAAGCAAAGATTTGGTGAGAACATGGGTCAACTCTTGGACCCAAACCATGCCTCAATATTGAAGTCAGCTGCAGCTGGTGGTCAGCCTTCAGGGCAAGTTTTGCATGGCACTGCTGGTGGGATGTCTCCACAAGTTCAAGCTCGTAGTCAGCAACTACCAGGGTCTACACCGGATATAAAGAGTGAGATAAATCCGGTTTTAAATCCCAGAGCTGCGGGTCCTGAAGGATCATTGTTAGGAATTTCCGGATCAAATCAAGGGAACAACAATTTGACTTTGAAAGGGTGGCCACTCACAGGTTTGGAGCAACTTCGCTCTGGTTTACTTCAGCAGCAAAAGCCTTATATGCAGGCTCCTCAGCCGTTTCATCAACTACAAATGTTGACACCACAGCATCAGCAACAACTTATGCTTGCACAACAGAGTTTGGCATCACCTTCTGCCAGTGAAGAAAGTAGAAGGCTGAGAATGCTTCTGAATAATAGGAATATTGGCCTAAATAAGGATGGCCTTTCGAACCCTGGGGGTGACATGTTATCGAATGTTGGATCACCTCTTCATGGCGGTGGCCCTCCTTTTCCCCGTGGAGATACAGATATGCTAATGAAGTTGAAACTGGCTCAGTTACAGCAGCAACAACAACAGCAGCAACATCAACAACAGTCGAGCATCAATGCACAACAGCAGCAACTTCAACAGCATGCTCTTTCAAATCAGCAATCTCAGACTTCAAATCATAGCATGCACCAGCAAGATAAGGTAGGGGGAGGTGGTGGTAGTGTCACCATGGATGGCAGCATGTCAAACTCATATAGAGGAAATGATCAGGTTTCAAAAAACCAGATGGGAAGAAAGAGAAAGCAACCTGTATCTTCTTCGGGTCCTGCAAATAGTTCAGGAACGGCAAATACGGCAGGCCCATCACCAAGTTCAGCCCCCTCAACGCCCTCAACTCATACTCCTGGAGATGCTGTTTCAATGCCTGCTTTACCTCATACTAGTAGTTCTTCAAAGCCTCTAATGATGTTTAGCACTGATGGTACTGGAACTCTTACATCACCTTCAAACCAGTTGTGGGATGATAAGGATCTTGAATTGAAGGCTGATGTGGATCGCTTTGTGGACGATGGGTCTTTAGATGATAATGTAGAGTCTTTTTTATCGCAAGATGATACGGATCCTAGAGATCCTGTCGGCCGTTGTATGGATGTAAGCAAAGGCTTCACATTTTCTGATGTAAATTCTGTACGTGCAAGCTCAAGCAAAATTGCCTGTTGCCATTTCTCATCTGATGGAAAATTACTTGCAAGTGGTGGCCATGACAAAAAGGCTGTTATATGGTATGCGGATTCACTAAAACAAAAAGCTATTCTTGAAGAGCACTCATCTTTGATAACTGATGTCCGTTTCAGTGCAAGCATGCCGCGTCTAGCAACATCTTCATTCGACAAAACTGTCAGGGTTTGGGATGTTGAGAATCCTGGGTATTCTCTTCGCACTTTTACGGGACATTCTGCATCTGTCATGTCGCTAGATTTTCACCCAAATAAAGATGATCTTATATGCTCGTGTGATGGTGATGGTGAGATACGATATTGGAGCATAAACAATGGCAGTTGTGTTAGAGTCTCCAAGGGTGGCACTACCCAGATGAGATTTCAACCTCGTCTAGGGAGGTACCTTGCTGCAGCAGCTGAAAACATCGTGTCTATACTTGATGTGGAAACACAGGCATGCCGATATTCATTAAAGGGTCACACAAAGACAATAAATTCTGTATGTTGGGATCCATCGGGGGAATTGCTGGCATCTGTGAGTGAGGACTCTGTCAGGATTTGGACTCTTGAAGGGGAATGTGTTCATGAGCTTAGCTGTAATGGGAGTAAGTTTCACTCATGTGTTTTCCATCCAACATTCCCTTCACTGCTCGTCATTGGTTGTTACCAGTCATTGGAGCTGTGGAACATGGCTGAGAACAAGACAATGACTTTGTCTGCTCATGATGGTTTAATTACTGCCTTGGCGGTTTCAACTGTAAATGGTTTGGTTGCTTCTGCCAGTCATGACAAGTTCATCAAGCTTTGGAAGTAA 2697 0.4498 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQPQPQQSPHVQQQQQQHMQMQQLLMQRHAQQQQQQQQHQQQPQSQPQQPQPQPQQQQNRDRAHLLNGSANGLAGNPATANAIATKMYEERLKGPPQRDSLDDAAMKQRFGENMGQLLDPNHASILKSAAAGGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDIKSEINPVLNPRAAGPEGSLLGISGSNQGNNNLTLKGWPLTGLEQLRSGLLQQQKPYMQAPQPFHQLQMLTPQHQQQLMLAQQSLASPSASEESRRLRMLLNNRNIGLNKDGLSNPGGDMLSNVGSPLHGGGPPFPRGDTDMLMKLKLAQLQQQQQQQQHQQQSSINAQQQQLQQHALSNQQSQTSNHSMHQQDKVGGGGGSVTMDGSMSNSYRGNDQVSKNQMGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAVSMPALPHTSSSSKPLMMFSTDGTGTLTSPSNQLWDDKDLELKADVDRFVDDGSLDDNVESFLSQDDTDPRDPVGRCMDVSKGFTFSDVNSVRASSSKIACCHFSSDGKLLASGGHDKKAVIWYADSLKQKAILEEHSSLITDVRFSASMPRLATSSFDKTVRVWDVENPGYSLRTFTGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCVRVSKGGTTQMRFQPRLGRYLAAAAENIVSILDVETQACRYSLKGHTKTINSVCWDPSGELLASVSEDSVRIWTLEGECVHELSCNGSKFHSCVFHPTFPSLLVIGCYQSLELWNMAENKTMTLSAHDGLITALAVSTVNGLVASASHDKFIKLWK 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g07471 898 ProSiteProfiles Trp-Asp (WD) repeats profile. 866 898 IPR001680 GO:0005515
Mepo3g07471 898 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 866 898 - -
Mepo3g07471 898 Gene3D - 765 898 IPR015943 GO:0005515
Mepo3g07471 898 MobiDBLite consensus disorder prediction 407 453 - -
Mepo3g07471 898 MobiDBLite consensus disorder prediction 464 524 - -
Mepo3g07471 898 ProSiteProfiles Trp-Asp (WD) repeats profile. 785 818 IPR001680 GO:0005515
Mepo3g07471 898 MobiDBLite consensus disorder prediction 531 546 - -
Mepo3g07471 898 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 898 - -
Mepo3g07471 898 CDD WD40 618 898 - -
Mepo3g07471 898 Gene3D - 611 764 IPR015943 GO:0005515
Mepo3g07471 898 SMART Lish 8 40 IPR006594 GO:0005515
Mepo3g07471 898 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 785 818 - -
Mepo3g07471 898 ProSiteProfiles Trp-Asp (WD) repeats profile. 660 695 IPR001680 GO:0005515
Mepo3g07471 898 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 660 695 - -
Mepo3g07471 898 MobiDBLite consensus disorder prediction 369 546 - -
Mepo3g07471 898 SUPERFAMILY WD40 repeat-like 616 898 IPR036322 GO:0005515
Mepo3g07471 898 ProSitePatterns Trp-Asp (WD) repeats signature. 679 693 IPR019775 -
Mepo3g07471 898 ProSiteProfiles Trp-Asp (WD) repeats profile. 618 649 IPR001680 GO:0005515
Mepo3g07471 898 SMART WD40_4 611 650 IPR001680 GO:0005515
Mepo3g07471 898 SMART WD40_4 653 692 IPR001680 GO:0005515
Mepo3g07471 898 SMART WD40_4 859 898 IPR001680 GO:0005515
Mepo3g07471 898 SMART WD40_4 696 736 IPR001680 GO:0005515
Mepo3g07471 898 SMART WD40_4 818 857 IPR001680 GO:0005515
Mepo3g07471 898 SMART WD40_4 778 816 IPR001680 GO:0005515
Mepo3g07471 898 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Mepo3g07471 898 Pfam LisH 10 36 IPR006594 GO:0005515
Mepo3g07471 898 Pfam WD domain, G-beta repeat 781 815 IPR001680 GO:0005515
Mepo3g07471 898 Pfam WD domain, G-beta repeat 861 898 IPR001680 GO:0005515
Mepo3g07471 898 Pfam WD domain, G-beta repeat 699 736 IPR001680 GO:0005515
Mepo3g07471 898 Pfam WD domain, G-beta repeat 658 692 IPR001680 GO:0005515
Mepo3g07471 898 Pfam WD domain, G-beta repeat 620 649 IPR001680 GO:0005515
Mepo3g07471 898 FunFam Transcriptional corepressor LEUNIG 746 898 - -
Mepo3g07471 898 ProSiteProfiles Trp-Asp (WD) repeats profile. 703 745 IPR001680 GO:0005515
Mepo3g07471 898 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 703 741 - -
Mepo3g07471 898 MobiDBLite consensus disorder prediction 90 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g07471 Mepo-Chr3 88052914 88060509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g07471 697 897 Miscellaneous Gene Families AT5G08390 25.121 2.84e-13 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Mepo3g07471 WD40 0.0031 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g07471 - - gmx:100816263 1265.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g07471 3 88052914 88060509 Mepo3g07471 3 88052914 88060509 ECH
Mepo4g00668 4 8996305 9006851 Mepo3g07471 3 88052914 88060509 PCT