Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g07398 ATGGCGTATCACAACCAAGACAACTCACTCCACCATTTCACAGAACAACAACAACAACCAACCTCCGATCCTCACCACTCTTTCCAAACCGCACCTAACTGGCTCAACAACGCCCTTCTTCGCAACCTCGACACCAACGTCAACGCCACTGCCACCAACAACAACAACGGTCCTAACTTCCTCAACCTCGACACCGCCGGTTCCCAATCCTCCGGTCAATGGCTCTCCCGTCCTGTCCTCCACCGAAACCACAGCGAAGTCATTGACGACGTCACCGGTGCCGGCATGAAGGAGGAGGAAAGCGGCGAGGCAACAGCGGAGGGAGTGATGAACTGGCAGAAAGCGAAACACAAAGGTGAAATAATGGCGCACCCATTATATGAACAGCTTCTATCAGCACACGTGTCGTGTTTGAGAATCGCCACGCCGGTTGACCAGTTGCCCAGGATCGACGCTCAGCTGGCAGAGTCGCAGAATATTGTTGCCAAGTACTCTGCCTTAGGACAACAGGGCATGCTTAATAACGATGATAATAAACAACTCGACCACTTCATGTCGCACTATGTTTTGTTGCTTTGTTCGTTCAAAGAACAGCTCCAACAACATGTCCGAGTCCATGCAATGGAAGCAGTAATGGCTTGTTGGGAGATCGAACAGTCCTTACAAAGTCTAACAGGAGTTTCACCAGGGGAAGGTACAGGAGCAACAATGTCCGAAGATGAAGATGAGCAAGTAGACAGTGATGTTAATCTGTTTGATGGAGGTTTGGATGGTTCAGATAATAGTATGGGAGGATTTGGTCCTCTTGTTCTAACAGAGAATGAGAGGTCCCTCATGGAACGTGTAAGACATGAATTAAAGCATGAGTTGAAACAGGGTTATAAAGAGAAAATTGTGGACATAAGAGAGGAAATTTTACGCAAGAGACGAGCTGGAAAACTTCCTGGTGACACAACCTCGGTACTTAAAGATTGGTGGCAATCACATTCAAAGTGGCCTTATCCTACTGAAGAGGATAAGGCAAGGTTGGTGCAAGAAACCGGGTTGCAATTGAAACAGATCAATAACTGGTTTATCAATCAAAGGAAGAGGAACTGGCACAGCAATCCTTCAACTTCTAATGCGTTGAAGAGCAAGCGCAAGAGGTATTTCTATATTAAAAAAATAGTCCTTTTCATAATCTTAAATTTGCATGAACTCTGCACCGATCTTGAATAG 1218 0.4622 MAYHNQDNSLHHFTEQQQQPTSDPHHSFQTAPNWLNNALLRNLDTNVNATATNNNNGPNFLNLDTAGSQSSGQWLSRPVLHRNHSEVIDDVTGAGMKEEESGEATAEGVMNWQKAKHKGEIMAHPLYEQLLSAHVSCLRIATPVDQLPRIDAQLAESQNIVAKYSALGQQGMLNNDDNKQLDHFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSEDEDEQVDSDVNLFDGGLDGSDNSMGGFGPLVLTENERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKDWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSNALKSKRKRYFYIKKIVLFIILNLHELCTDLE 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g07398 405 SMART HOX_1 307 372 IPR001356 GO:0003677
Mepo3g07398 405 SMART KNOX1_2 115 159 IPR005540 GO:0003677|GO:0005634
Mepo3g07398 405 SMART ELK_2 285 306 IPR005539 GO:0003677
Mepo3g07398 405 Gene3D - 306 367 - -
Mepo3g07398 405 Pfam KNOX1 domain 118 158 IPR005540 GO:0003677|GO:0005634
Mepo3g07398 405 Pfam KNOX2 domain 177 225 IPR005541 GO:0003677|GO:0005634
Mepo3g07398 405 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 117 369 - -
Mepo3g07398 405 FunFam homeobox protein knotted-1-like 3 isoform X1 306 367 - -
Mepo3g07398 405 MobiDBLite consensus disorder prediction 225 244 - -
Mepo3g07398 405 ProSiteProfiles ELK domain profile. 285 305 IPR005539 GO:0003677
Mepo3g07398 405 Pfam Homeobox KN domain 325 364 IPR008422 GO:0003677|GO:0006355
Mepo3g07398 405 CDD homeodomain 308 369 IPR001356 GO:0003677
Mepo3g07398 405 ProSiteProfiles 'Homeobox' domain profile. 305 368 IPR001356 GO:0003677
Mepo3g07398 405 SMART KNOX2_2 171 226 IPR005541 GO:0003677|GO:0005634
Mepo3g07398 405 Pfam ELK domain 285 306 IPR005539 GO:0003677
Mepo3g07398 405 SUPERFAMILY Homeodomain-like 307 372 IPR009057 -
Mepo3g07398 405 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g07398 Mepo-Chr3 87412427 87417643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g07398 1 382 Homeobox Transcription Factor Family AT5G25220 65.675 0.0 512
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Mepo3g07398 KNOX2 5.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g07398 - - gmx:100790048 578.17