Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g07390 ATGGAAATACCATTGCAGAATCCACATGAAGTGGAGAAACATAAAACTTTTGAGGAAGAAGAAAAGGTAGATACTTTATTTGATCTGAATGTTCCTAACGATGATTGTGATCTTGGGTACAATTCAGAGTCAAATTTAGTTACCCATTTGGACATAGGCAATTCTTCTAAAACATCATCAGAAAATTTCACTTGTGGCTCTGAATCAACTTCAGAGCCACAATTTTTCACTTGCAACTACTGTAAGAGAAAATTCTACAGTTCACAAGCACTCGGGGGACATCAAAATGCTCACAAGAGGGAGAGGTCAATTGCAAAAAGAGGACGGAGGACGGTGTTCTCGGCAACAGGAACAACCTCATTTCTTCAGAACCATCTTCACAACCGTTATGCAAATATGGCATCTTTACTACCACTCTATAGTGCTAATAGTGATAGTATGAGACCACTTGCAATTAAGGCACACTCGATGGTTCATAAGCCTTTTCATAAATTTTCATCCAATGGCTTTGGAACTGAAAGCACTTATTATGGATATCATGGTTGGTCAAGACCCCTTATGAATCAACAACCTGGAAGAGGAAAGCTACTGATGCAAACTTTCCAGGAAACAGGATTATCATCACAAACTAGTGTTGGTAGATTCGAAGAGGTTAAACAGGACATGCTCAATTCAGGAACTGGTTTGAACTTGAGGATTAGTAATCAACAAGAGGTGAAGCACCTTGACTTATCCTTAAAGCTCTAA 747 0.3882 MEIPLQNPHEVEKHKTFEEEEKVDTLFDLNVPNDDCDLGYNSESNLVTHLDIGNSSKTSSENFTCGSESTSEPQFFTCNYCKRKFYSSQALGGHQNAHKRERSIAKRGRRTVFSATGTTSFLQNHLHNRYANMASLLPLYSANSDSMRPLAIKAHSMVHKPFHKFSSNGFGTESTYYGYHGWSRPLMNQQPGRGKLLMQTFQETGLSSQTSVGRFEEVKQDMLNSGTGLNLRISNQQEVKHLDLSLKL 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g07390 248 SUPERFAMILY beta-beta-alpha zinc fingers 74 103 IPR036236 -
Mepo3g07390 248 ProSitePatterns Zinc finger C2H2 type domain signature. 78 98 IPR013087 -
Mepo3g07390 248 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 103 IPR013087 -
Mepo3g07390 248 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 10 248 IPR044246 GO:0009788
Mepo3g07390 248 Gene3D Classic Zinc Finger 52 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g07390 Mepo-Chr3 87312540 87313358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g07390 41 248 C2H2 Transcription Factor Family AT5G10970 39.381 8.13e-29 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo3g07390 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g07390 - - tpra:123898424 308.145
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g00589 4 8116284 8116604 Mepo3g07390 3 87312540 87313358 PCT