Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g07389 ATGGATGATTCCGGTGACCGTTTTCCTATCGGAATGCGTGTTCTCGCCGTTGACGACGATCCAACTTGTCTCTTGGTTTTGGAAACTCTTCTCCGTAGATGTCAATACCACGTAACCACAACTAGTCAAGCAATAACGGCGTTGACCATGTTGAGAGAAAACAAAGACAAGTTTGACCTGGTAATCAGTGATGTGCACATGCCGGACATGGATGGATTTAAGCTGCTTGAACTTGTGGGACTTGAAATGGACCTTCCCGTCATAATGTTGTCTGCATATGGTGATACAAAGCTAGTGATGAAAGGAATTTCCCATGGTGCCTGTGATTATCTGCTGAAACCTGTGAGATTAGAGGAGCTAAAGAACATTTGGCAGCATGTAATTAGGAAGAAGAAGTCTGATCCAAAGGAGAAAAACAAAACCAGTAAACCAGACAAAACCACTTCTGATAGTGGCAGTGGACTAAGATCAGCCGGAGCAGAAAATTCAGATGAAAATGGAAAGCTGACTAAGAAAAGAAAGGATCAGGATGAAGACGAAGACGAGGATAAAGAGAATGGTAATGACAATGAGGACCCATCAGCTCAGAAGAAGCCCCGGGTTGTTTGGTCTGTGGAGCTGCACCGCAAGTTTGTTGCCGCTGTTAATCAGTTAGGCATTGACAAGGCTGTACCCAAAAAAATTCTTGATATGATGAATGTCGAAAATATTACAAGGGAGAATGTGGCAAGCCATCTCCAGAAGTATAGACTTTATCTGAAAAGAATTAGCTGTGTTGCAAACCAACAAGCTAGTATGGTGGCAGCCTTAGGGAGTGCAGATCAATCTTATTTGAGAATGGGTGGTTCTGGACATTTTCACAATAATGCTTTCAGATCCTTTTCACCTAGTGGGATAATTGGTAATCTGAACACTCCAACTAGTCTTAACGGGCATGGATTTTCTCCTTCGGGACTACTTCAGTTGGGCCAATCACGTAATTTAAACAATTCTTCCAATGATCAACTTAAATTCCAGTCAGCCATTACTCCCGTTAATCAGAATATTCTTCAGGGAATGCCAATGTCCATAGGGTTTGATCACTTGCAAAACAACAAGGGTGTTATCTCTGTTCAAAACCTGAATACTGATGTGAAAACAACTTTTCCCATCCCAAATAAATTCCCGGATCAAAGGCCAAGTTTTGCCACCTCTAGTTCTCATCCCCCAAGTCTCGGTATCTCAAACAATGGCTTGATTATGGAAACACACCCTGAAAGAAAACACGGAGGTATAGGAATAGGATATGGAAGTTCATCTTCTTCAGTAGCCTCTCAACATTCAGATTTTTCTTTCTCCATGCTGGATCAAGGTAGGCACGGTGATAACTGGTCAAGTGAGGTGCCGTTATCTGGAATCCAAACAAATTCTTTCTCTTCAGGTGAATGTTTTAGACAGACTGCTGTTCCTCCTTCAGATAACATGGCTTCTTTGCCCTTGCAAGCAGGGTATCCTGGTGGTTCGTTGCCAGATATGCACTCCCAAGGAATGATTTTTAATAATTCACCTGAGTATATAAACGGTAATTTGCCATTTCAAGGATGGGAAGACCGTAATCAGGATGCTACTTACCACTCAAATGTTGCTTGTGGATCAATGAACTCTCTTGCTTCAGTTAACGGTGCCGTTGTTCCACCAGGCCAAACAACAACTAGCTCCACCTTGGATACTAAATTTTTTAATCCCATACAAATGAAGCATGCTGGATTTGCTGAGTTAACTGAATGCAGCTCATCAAGACAATCTCCAGCTAATATCATAAGCCAACAGAAGTTTTCTAATAATCTTGGTTCACTGGAATACTTGGCGAGTTCAATGATGGGACAGGAGCAAGATAAGATCAAATTATTGGGTGGAGACTTCATATGCGATAATTACTCCGACGGGGTATCTTTGTGA 1938 0.4195 MDDSGDRFPIGMRVLAVDDDPTCLLVLETLLRRCQYHVTTTSQAITALTMLRENKDKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSAYGDTKLVMKGISHGACDYLLKPVRLEELKNIWQHVIRKKKSDPKEKNKTSKPDKTTSDSGSGLRSAGAENSDENGKLTKKRKDQDEDEDEDKENGNDNEDPSAQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDMMNVENITRENVASHLQKYRLYLKRISCVANQQASMVAALGSADQSYLRMGGSGHFHNNAFRSFSPSGIIGNLNTPTSLNGHGFSPSGLLQLGQSRNLNNSSNDQLKFQSAITPVNQNILQGMPMSIGFDHLQNNKGVISVQNLNTDVKTTFPIPNKFPDQRPSFATSSSHPPSLGISNNGLIMETHPERKHGGIGIGYGSSSSSVASQHSDFSFSMLDQGRHGDNWSSEVPLSGIQTNSFSSGECFRQTAVPPSDNMASLPLQAGYPGGSLPDMHSQGMIFNNSPEYINGNLPFQGWEDRNQDATYHSNVACGSMNSLASVNGAVVPPGQTTTSSTLDTKFFNPIQMKHAGFAELTECSSSRQSPANIISQQKFSNNLGSLEYLASSMMGQEQDKIKLLGGDFICDNYSDGVSL 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g07389 645 Pfam Response regulator receiver domain 14 122 IPR001789 GO:0000160
Mepo3g07389 645 Gene3D - 11 148 - -
Mepo3g07389 645 MobiDBLite consensus disorder prediction 165 179 - -
Mepo3g07389 645 NCBIfam myb-like DNA-binding domain, SHAQKYF class 198 251 IPR006447 GO:0003677
Mepo3g07389 645 Pfam Myb-like DNA-binding domain 200 250 IPR001005 -
Mepo3g07389 645 CDD REC_typeB_ARR-like 14 128 - -
Mepo3g07389 645 SMART REC_2 12 124 IPR001789 GO:0000160
Mepo3g07389 645 MobiDBLite consensus disorder prediction 130 145 - -
Mepo3g07389 645 FunFam Two-component response regulator 194 257 - -
Mepo3g07389 645 MobiDBLite consensus disorder prediction 130 200 - -
Mepo3g07389 645 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 195 254 IPR017930 -
Mepo3g07389 645 SUPERFAMILY Homeodomain-like 196 255 IPR009057 -
Mepo3g07389 645 Gene3D - 194 257 - -
Mepo3g07389 645 ProSiteProfiles Response regulatory domain profile. 13 128 IPR001789 GO:0000160
Mepo3g07389 645 MobiDBLite consensus disorder prediction 146 164 - -
Mepo3g07389 645 SUPERFAMILY CheY-like 11 132 IPR011006 -
Mepo3g07389 645 PIRSF RR_ARR_type-B 1 643 IPR017053 GO:0003677|GO:0003700|GO:0009736
Mepo3g07389 645 PANTHER TWO-COMPONENT RESPONSE REGULATOR 12 349 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g07389 Mepo-Chr3 87304602 87309352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g07389 6 419 Response Regulator Gene Family AT2G25180 53.211 8.34e-131 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Mepo3g07389 Response_reg 1.4e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g07389 K14491 - gmx:100809002 853.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g07389 3 87304602 87309352 Mepo3g07389 3 87304602 87309352 ECH