Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g07388 ATGAGTAGCTTGGTTGAAAGGCTTCGTGTACGATCATCGGATCGCAAGCCAATTTATAATCTTGATGAGTCAGATGATGAAGATTTTTTGCTTAAAAAACCTGGAACAAGTCAGGAAAAGTTTGAGAGGATTGATAGAAGTGATGCGAAAGAGGATTTATGTCAAGCATGTGGTGAAAGTGGAGATCTCCTGAGTTGTGCAACTTGCAACTATGCTTACCATTCTAGGTGTTTACTTCCACCGCTTAAAGGTCCCGCTCCTGACAACTGGAGGTGCCCTGAATGCGTTACACCCCTTATTGATATTGATAAGTTATTAGACTGTGAGATGCGCCCTACTGTAGAGGGTGATGGTGGCGGTGACAGTGACGCCGCAAAATCTGGGTCAAAGCAAATTTTTGTTAAACAATATCTTGTTAAGTGGAAGGGACTATCATATCTGCACTGTACATGGGTGCCAGAGAAAGAGTTTCTGAAAGCTTTCAAGAGTCATCCTCGCTTGAAGACCAAAGTGAACAACTTCCACCGTCAAATGGCATCCTCCAATACGTCAGATGAAGACTTTGTTGCCATTCGTCCTGAATGGACCACAGTTGATCGAATAATTGCTTGCAGGGGTGATAACGATGAGAGGGAATATCTGGTGAAGTGGAAGGAGCTTCCATATGATGAATGTTATTGGGAATCTGAGTCTGATATTTCTGCATTTCAGCCGGAAATAGAAAGATTCAATAGATTTCGTTCTAGATCGAGCAAACTTGCTTTCATTAAGCAAAAAAGCCGTGTTAATGATGACAATGAATTGAAGAAACAGCAGAAAGAATTTCATCAGTATGAACATAGCCCCGAGTTTCTTTCAGGTTCTCTACACCCATATCAGCTTGAAGGCTTGAACTTCCTACGATTCTCTTGGTCCAAGCAAACACATGTTATACTTGCTGATGAAATGGGACTTGGAAAAACTATACAAAGTATTGCTTTCTTAGCATCCCTTTTTGAAGAGGGTGTCTCTGCACATCCACATCTGGTGGTTGCTCCACTTTCAACACTGCGAAACTGGGAACGTGAATTTGCAACATGGGCCCCTCAAATGAATGTTATTATGTATGTTGGATCTGCCCAAGCTCGTAGTGTTATCAGAGAATATGAATTTTACTTTCCCAAGAAACTGAAGAAGAACAAGAAAAAGAAATCTATAGTTAGCGAAAGTAAGCATGACAGGATTAAGTTTGATGTCCTTTTGACATCATATGAGATGATCAACTTAGACACAACGTCATTAAAACCTATAAAATGGGAGTGCATGATAGTTGATGAAGGTCACCGCCTCAAAAATAAGGATTCAAAATTATTTTCTTCATTGAAGCAATATTCCACCAGACATCGTGTGCTCTTGACTGGAACTCCTCTCCAGAACAATTTGGATGAACTTTTTATGCTTATGCACTTCCTTGATGCGGGGAAGTTTGCAAGTTTAGAGGAATTCCAAGAAGAATTCAAGGATATCAATCAAGAGGAACAGATTTCAAGGCTTCATAAAATGCTGGCCCCGCATCTTCTGCGAAGAGTGAAGAAAGATGTCATGAAGGAACTACCTCCTAAAAAGGAACTTATTCTACGAGTGGATTTGAGCAGCAAACAGAAAGAATATTATAAGGCAATTTTGACCCGTAATTATCAGATATTAACTCGTCGTGGTGGTGCACAGATTTCTCTTATCAACGTTGTTATGGAACTGCGTAAGCTCTGTTGTCATGCTTACATGTTAGAAGGAGTTGAGCCAGATATTGACGATCCAAAAGAAGCATTCAAGCAATTGCTGGAATCATCAGGGAAGTTGCACTTGCTGGATAAGATGATGGTGAAGCTTAAAGAACAAGGACATAGAGTTCTCATATACTCCCAGTTTCAGCACATGCTTGATTTGCTTGAAGATTACTGCTCTTACAAGAAATGGCATTATGAAAGGATAGATGGCAAGGTTGGTGGGGCTGAAAGACAAATACGGATAGATCGTTTTAATGCCAAAAATTCTTCAAGATTTTGCTTTCTTCTTTCTACAAGAGCCGGGGGTTTGGGAATAAACCTTGCAACTGCTGACACAGTTGTTATTTATGACAGTGATTGGAATCCTCATGCTGACTTACAAGCAATGGCTAGAGCTCATCGACTTGGACAAACTAACAAGGTGTTGATTTATAGGCTTATAACACGGGGAACAATTGAAGAAAGGATGATGCAAATGACTAAGAAGAAAATGGTGTTAGAACACCTTGTTGTAGGAAGGCTAAAGGCTCAAAATATCAACCAGGAAGAGTTGGATGACATCATACGATATGGCTCAAAGGAGTTATTTGCAGATGAGAATGATGAAGCAGGAAAATCCCGTCAAATCCATTACGATGCAGCTGCTATCGATAGGTTGCTGGATCGTGACCAAGTTGTAGATGAAGAAACTACTTTGGATGATGAAGATGAAGATGGATTTCTGAAGGCCTTTAAGGTTGCAAATTTTGAGTATGTTGATGAGGCTGAGGCTGCTGCAGAGGAGGCAGCACAAAAAAGAGCAATGGAAACCGTTAACAGTTCAGATAGAACACATTATTGGGAAGAGTTGTTAAAAGACAAGTTTCAGGAGCATAAAGTTGAGGAGTTTAATGCTTTGGGAAAAGGAAAGCGAAACCGAAAATTGATGGTTTCTGTTGAGGAGGACGACCTTGCTGGTCTTGAAGATGTAAGCTCTGACGAAGACGACAATTATGAAGCAGAGCTTACTGACGGTGATTCAAATTCCACTGGAACTACTACTACTACTAGAAGGCCGTATAAGAAAAAAGCACGTACGGATAGCACAGAGCCGCTTCCTCTGATGGAAGGTGAAGGAAAAGCATTCAGAGTACTTGGTTTTAATCAAAGTCAGAGGGCTGCCTTTGTGCAAATTTTGATGAGGTTTGGGGTTGGTGATTTTGATTGGAAAGAGTTTACTTCGCGCATGAAACAGAAGACTTATGAAGAAATCAAAGACTATGGGACCCTTTTCTTGTCTCATATTGCTGAAGACATAACCGATTCCTCTACATTCACAGACGGTGTTCCAAAAGAAGGACTCCGAATCCAAGATGTACTTGTTAGGATTGCAGTCCTGCTCTTGATAAGGGACAAAGTGAGGTTTGCATCAGAGCATCCTCAAACTCCACTGTTTTCAGATGACATCTTGTTACGCTATCCAGGTTTGAAGGGTATAAGGAAGTGGAAGGAGGAGCATGATTTTATGCTACTACGTGCTGTGTTAAAGCACGGGTATGGAAGGTGGCAAGCTATTGTTGATGATAGGGATCTGAAGATACAGGAGATCATCTGTCAGGAGTTGAATCTTCCCGCTATAAATTTACCAGGACCAGGACAGGTTGGCTCTCACGTACAAAATGGTGCAAATGTTGCAAATGCAGAAATACCAAGCAATGAATCCAGGGAAAATGGTGGAAGTGGCATAGCAGCTGATGGTGCACAAGGTTCTGGTGATGCTAAGAACCAAACACAGCTATATCAAGACTCTTCCTTATATCATTTTAGAGACATGCAGAGAAGACAGGTTGAATTTGTAAAAAAGAGGGTTCTTCTTTTGGAAAAGGGGCTAAATGCTGAGTACCAAAAAGAATACTTTGGTGATCCAAAAGCTGGTGAAGTAACCAATGAAGAACTTAAAAGTGAACCCAAGTCTACCACTATTCCAAGTTATATATCAGGAGATACTGACACCCAAATGATTGATCAATTGCCACAAGTAGAAATAATAGCTCCAGAAGATGTTTCGGTTGCTTGTGATAGTGATTCAAATCGACTGGAATTAGTTCGACTTTACAATGAGATGTGCAAGGTAGTTGAGGAAAACCCTATGGATTTAGTTCAATCATCATTGGCAAGAGAACCGGCAGAGGTCAATGCGGTGAAGAAGTGCCCGCCAATAGAAACCATCTGTGAAGATATCAACAGAATTCTAACACCCACAGTAGAACAACCTGTTGCAGAAACTCCAGTATTAAATTCAGATATCAAATCAGAGGAAATATCACACATTGAAGTTTTGGGGTCCAAATCACCGCCTAACCCTCAAAATGATCTGAAACGTGATTCTTTAGCAAACGACGATGCAAAAGATATGGTAGTAGACTCTGCGGAGAAAAAGGAAAGTAATACAGCGATGGATGAAAGTAGCAATGCTGAGTTGAATGAGGACACATAA 4242 0.4069 MSSLVERLRVRSSDRKPIYNLDESDDEDFLLKKPGTSQEKFERIDRSDAKEDLCQACGESGDLLSCATCNYAYHSRCLLPPLKGPAPDNWRCPECVTPLIDIDKLLDCEMRPTVEGDGGGDSDAAKSGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSHPRLKTKVNNFHRQMASSNTSDEDFVAIRPEWTTVDRIIACRGDNDEREYLVKWKELPYDECYWESESDISAFQPEIERFNRFRSRSSKLAFIKQKSRVNDDNELKKQQKEFHQYEHSPEFLSGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEEGVSAHPHLVVAPLSTLRNWEREFATWAPQMNVIMYVGSAQARSVIREYEFYFPKKLKKNKKKKSIVSESKHDRIKFDVLLTSYEMINLDTTSLKPIKWECMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFASLEEFQEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRVDLSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHAYMLEGVEPDIDDPKEAFKQLLESSGKLHLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCSYKKWHYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVVIYDSDWNPHADLQAMARAHRLGQTNKVLIYRLITRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADENDEAGKSRQIHYDAAAIDRLLDRDQVVDEETTLDDEDEDGFLKAFKVANFEYVDEAEAAAEEAAQKRAMETVNSSDRTHYWEELLKDKFQEHKVEEFNALGKGKRNRKLMVSVEEDDLAGLEDVSSDEDDNYEAELTDGDSNSTGTTTTTRRPYKKKARTDSTEPLPLMEGEGKAFRVLGFNQSQRAAFVQILMRFGVGDFDWKEFTSRMKQKTYEEIKDYGTLFLSHIAEDITDSSTFTDGVPKEGLRIQDVLVRIAVLLLIRDKVRFASEHPQTPLFSDDILLRYPGLKGIRKWKEEHDFMLLRAVLKHGYGRWQAIVDDRDLKIQEIICQELNLPAINLPGPGQVGSHVQNGANVANAEIPSNESRENGGSGIAADGAQGSGDAKNQTQLYQDSSLYHFRDMQRRQVEFVKKRVLLLEKGLNAEYQKEYFGDPKAGEVTNEELKSEPKSTTIPSYISGDTDTQMIDQLPQVEIIAPEDVSVACDSDSNRLELVRLYNEMCKVVEENPMDLVQSSLAREPAEVNAVKKCPPIETICEDINRILTPTVEQPVAETPVLNSDIKSEEISHIEVLGSKSPPNPQNDLKRDSLANDDAKDMVVDSAEKKESNTAMDESSNAELNEDT 1413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g07388 1413 CDD CD2_tandem 194 245 - -
Mepo3g07388 1413 MobiDBLite consensus disorder prediction 907 924 - -
Mepo3g07388 1413 Gene3D - 532 756 IPR027417 -
Mepo3g07388 1413 SMART DUF1086_2 917 1072 IPR009462 GO:0003677|GO:0006338
Mepo3g07388 1413 Pfam Helicase conserved C-terminal domain 613 725 IPR001650 -
Mepo3g07388 1413 SUPERFAMILY Chromo domain-like 66 180 IPR016197 -
Mepo3g07388 1413 Pfam CHD subfamily II, SANT-like domain 936 1069 IPR009462 GO:0003677|GO:0006338
Mepo3g07388 1413 MobiDBLite consensus disorder prediction 925 939 - -
Mepo3g07388 1413 ProSiteProfiles Chromo and chromo shadow domain profile. 196 245 IPR000953 -
Mepo3g07388 1413 SMART helicmild6 641 725 IPR001650 -
Mepo3g07388 1413 SUPERFAMILY Chromo domain-like 183 246 IPR016197 -
Mepo3g07388 1413 CDD SF2_C_SNF 610 736 - -
Mepo3g07388 1413 SMART DUF1087_2 842 908 IPR009463 -
Mepo3g07388 1413 Gene3D - 100 192 - -
Mepo3g07388 1413 SMART chromo_7 99 172 IPR000953 -
Mepo3g07388 1413 SMART chromo_7 194 248 IPR000953 -
Mepo3g07388 1413 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 524 780 IPR027417 -
Mepo3g07388 1413 MobiDBLite consensus disorder prediction 1360 1413 - -
Mepo3g07388 1413 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 274 522 IPR027417 -
Mepo3g07388 1413 CDD CD1_tandem 102 176 - -
Mepo3g07388 1413 ProSitePatterns Zinc finger PHD-type signature. 54 95 IPR019786 -
Mepo3g07388 1413 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 301 487 IPR014001 -
Mepo3g07388 1413 MobiDBLite consensus disorder prediction 1152 1176 - -
Mepo3g07388 1413 Pfam SNF2-related domain 309 588 IPR000330 GO:0005524|GO:0140658
Mepo3g07388 1413 Gene3D - 193 245 - -
Mepo3g07388 1413 SMART ultradead3 285 498 IPR014001 -
Mepo3g07388 1413 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 615 776 IPR001650 -
Mepo3g07388 1413 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 47 1364 - -
Mepo3g07388 1413 ProSiteProfiles Zinc finger PHD-type profile. 51 98 IPR019787 -
Mepo3g07388 1413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 99 IPR013083 -
Mepo3g07388 1413 SMART PHD_3 53 96 IPR001965 -
Mepo3g07388 1413 Pfam Chromo (CHRromatin Organisation MOdifier) domain 126 161 IPR023780 -
Mepo3g07388 1413 Pfam Chromo (CHRromatin Organisation MOdifier) domain 197 245 IPR023780 -
Mepo3g07388 1413 MobiDBLite consensus disorder prediction 1376 1401 - -
Mepo3g07388 1413 Pfam CHD subfamily II, DUF1087 847 905 IPR009463 -
Mepo3g07388 1413 Gene3D - 1039 1213 - -
Mepo3g07388 1413 Pfam PHD-finger 54 96 IPR019787 -
Mepo3g07388 1413 Gene3D - 286 531 IPR038718 -
Mepo3g07388 1413 ProSiteProfiles Chromo and chromo shadow domain profile. 100 186 IPR000953 -
Mepo3g07388 1413 MobiDBLite consensus disorder prediction 907 955 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g07388 Mepo-Chr3 87280923 87299584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g07388 604 776 RAD5 or RAD16-like Gene Family AT5G22750 32.948 9.74e-23 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mepo3g07388 SNF2_N 1.1e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g07388 K11643 - gmx:100790230 2356.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g00574 4 8008145 8020085 Mepo3g07388 3 87280923 87299584 PCT