Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g07335 ATGGATTTATCAAACGACAACATGGATTCAATCATGGATTCATCAAACGACAATGATGATCAAAACCAAACTAAAAATCTCAAGAGAAAATTCGATCACTTGTATGCAAAACCCAATGCTGAACAAGATTCTCCATCTCAAGAAGAAACCCTCATTGCCAACTTGGTTCCTAGAAGGGATCAGTTGGAGGCATTCGAAGTTGCAAAAAAGAGGAACACAATTGCAATTATGGATACAGGTTCAGGAAAAACATTGATTGCTATACTTCTTATCAAAGAGACTGGTCAAGCTATTAGGTCCAGTGGTGTCAAAAAATTGATTGTTTTCTTAGCTCCCACTGTTCACCTTGTGAATCAGGCATTTGTTGCTTGTGCATTCACATTGCAGCAATACAAGAATATAAAACTGAATACAGATTTACAAGTTGAGGAATACTATGGGTCCAAAGGAGTTGATACATGGAATTTAAAGAGCTGGCAGAAGGAAATTAATGACAATGATGTAATGGTTATGACACCTCAGATTCTTTTGGATGCCTTCAGAAAAGCATTCTTGAGTATAGAAATGATATGCTTGATGGTTATTGACGAGTGTCACTGGGCATCAGGCAACCATCCCTATGCAAAAATAATGGCGGAGTTTTATCACCAAGCTAATGAAAAGCCAAAGATTTTCGGGATGACAGCATCACCAGTTGGTAAGAGAGGTGTTTCTTCTACTTTGGTTTGTGAGGGTCAGATATCAGACCTTGAAAACATCTTGGATTCTCAGAGTTACGTTGTTAAAGATCGGACGGAGATGGATGTATATATCCCATCTGCAAAAGAGAGTTGTAGATTCTATGACCCGGCACGGTTTCATGCTTTGAGTTTGAAGCCAAAAATTGAAGCTTCGTGGTCGAAGTGTGACGTGTTGTTGTCAGAATTTCAAAGTGATTATAAGGATATGGACCAAAAATTTAAGGCATTGCATCAGCGGATGTCCAATGAGCTTGCAAAAATTTTATATTGCCTTGAAGATCTTGGACTGTTGTGTGCTTATGAGGCAGCTAAAATCTGTCAACAGAAATTCTCCAAAATTCATGGAGAGTGTGAAGTTTACAGAAAAGCCAATCTTCAGTGTGTAACTATCATTGAAGAAGTAATCAAAATAATTGAAGAATCCCTCCATCTTGCCGATGAAATGATTTTGGATGTTGAATTTGATTGTTCAAAGGCAGTAGACATGGGATACATTTCACCAAAATTACTTGAACTTATTAAACTCTTCGAAACATTTGGAGAACCTAGTCAGTTATTGTGCCTCATATTTGTTGAAAGAATCATTACAGCAAAGGTGATTGAAAGATTTGTGAAAAAAGTTTCCCAGATATCTCATCTCACAGTTGCCTATGTAACTGGAAGCAATACATCAGCTGATGCACTGGCTCGTAAGAGGCAGAAAGAGATATTGGATTCTTTCCGATCCGGAAAGGTCAATCTTCTATTTACTACTGATGTACTTGAGGAAGGAATTCACGTGCCAAACTGCTCGTGTGTGATACGTTTTGACCTCCCCACGACAGTTTGTAGTTATATCCAATCTCGTGGAAGATCTAGACGTGCTAACTCCCAATTTATTTTGATGTTGGAGAGGGGAAATTTGAAGCAAAGAAATCAGCTTTTTGACATAATCAGGAGCGAGCGTTCCATGAATGATGCAGCTGTTAGTAAAGACCATGAATCTAATTTAAGGGCGTTTACTGTAAGGAAAACAGAATCATACTGTGTGGATTCTACCGGAGCATCAGTCACTTTAGACTCCAGTGTCAGTCTTATAAATCAATATTGCGAAAAGCTCCCACGAGACAAGTACTCCTCTGCTAAGCCCAATTTTGACTCGCTGCCTATGGAGGGAGGAGGGCACGTGTGTAAATTAATATTACCACCTAATGCAGCTTTCCAAACACTAGTTGGTCCTTCAGGAAAAGATGTTCGACAGGCAAAGACTCTCGTATGTTTAGAAGCTTGTAAGAAGCTGCATCAAATGGGTGCCTTAAATGACCATCTTGTTCCATTCATTGAAGATCCTTTAGAAGCAGACAATATTATAAAAAACAAGGAATCAAGTGCAGCTGCAGCTGCAGGTGCAGGGACCACGAAAAGAAAGGAGTTACACGGCACAGCCAGTGTTCGGGCATTATGTGGTTCATGGGGAGACAAACCTGATGGAGCCAAATTTCATGCTTATAAATTTGAATTCAAATGTAATATTGTTTCTGAAATTTATTCTGGATTCGTTCTTCTGGTCGAGTCAAAGCTTGATGATGATGTGGGAAATATAGAATTAGATCTGTATTTAATCTCAAAGATGGTGAAGACTTCTGTCATTTCATGTGGTCAAGTTGATTTGGATGCCGAACAGGTGACGAAAGCAAAAAGCTTCCATGAGCTTTTTTTCAACGGTTTATTCGGGAGATTGATTCGTAAGTCCACAACAGTCCAAGGGGAAAGGGAATTTTTACTGCAGAAAGACACGGAACTATTGTGGAGTCCAAAAAACTCGTATTTGCTTCTACCACTTGAGAAGTTAAATGATATATGTATCAGATCTTTGCAAATACATTGGTCTGCAATCAATTCTTGTGCTTCTGCTATTGAATTTGTGAGGCAGAGATTTTCGTTGGTTACGGAAGTTTCTGATGATAACAGCAAAATCATATCACCACCTTGTGATATCGATAACAGCAAAATCATATCACCACCTTGTGATACCAGTTCATCATCGGATATGGAATGTGAAAGCACAAACATGTTTCACTTTGCCAATTGTGTTGTTGATGTTAGTAGTGTGAAAGATAATGTAGCTTTGGCCATTCATACTGGAAAAGTATATTGTATCATTGATGTAGTTGATAACTCATCCGCTGAAAGTCCTTTTGACGGGAATAGTGACAAGTCTGGAGCAGAAGACAAGATGACGTTTACACAATATTTCCAGAAAAGGTATGGAATCACACTAAGACATCCAGAACAGCCTTTGTTAAGGTTGAAGCAAGGTCATAATGCACACAATCTTTTTCTGAACGTTCCCGAGGAAGCAGATGGTGGGGACAAGTCATCACAAGTTGGCCCGGTAGCCCCAAAAGTTCCTGTACATGTTCACATTCCACCCGAGCTTCTTTGCCTTCTTGATGTTAAAAGAGATGTGTACAAGTCAATGTACTTGCTACCATCTCTTATGTACCGTATTGAATCTTTGATGTTATCCAGTCAGCTTAGAGCAGAGATAAATGGTCACACAGACAATTTCAAGATACCTAGCTCTCTGATTCTAGAAGCACTTACAACTTTAAGATGCTGTGAAAAGTTTTCTATGGAACGTCTTGAGTTGCTAGGAGATTCTGTTTTGAAATATGCGGTGAGCTGTCATCTCTATCTTAAATATCCTAAGAAACATGAAGGACACTTATCGTCCTTGAGACAATGGGCTGTTCGTAATTCAACCCTACACAAGCTGGGAACAGATTGCAACTTACAGGGATATATTCGAGACTCCGCATTTGAACCGCGTCGTTGGATTGCTCCTGGACAAGACTGTATACACACCGTTCCTTGTGATTGTGGGTTGGAAACCTTAGAAGTGCCTTTAGATGTAAAGTTCCACACTGAAGATCCAAAAGTTGTGGTTGGAAAGTTGTGTGACAGGGGTCATCGCTGGATGTGCTCGAAGACTATTGCTGATTGTGTTGAAGCTCTGATAGGAGCATACTATGTAGGTGGTGGATTGATTGCTTCACTTCACATGATGAAATGGCTTGGGATTGATTCCGGACTTGAACCGTCAATGGTTGATAAAGCCATTACTGCTGCGTCTCTCCACACATATACGCCAAAAGTAAATGAGATTGCCAGCCTTGAGGCAAAAATTGGGTACGAATTTTCGGTCAAGGGACTCTTAGTGGAGGCAACCACACATTTGTCTGAGTCAGAACATGGAACTGGCTGCTGCTATGAGAGGCTTGAATTCCTTGGTGACTCAGTATTGGACCTGCTCATCACATGGCATCTATTTCAGAGTCATACTGAAATTGATCCGGGAGAGTTGACTGACTTGCGTTCTGCTTCTGTGAATAATGAAAATTTTGCTCAAGCTGCTGTTAGACGAAACCTTCACCAGCACCTTCTGCATAGCTCGGGATTATTACAAAGCCAGATATTAGAATATGCGAAAGTTATTTCTGAACCAGAAGACAATGCCGTACCACTCCAAGGGATTAAAGCTCCTAAGGCACTTGGAGATCTAGTAGAGAGTATTGCCGGGGCTATACTAATTGATACCAAGCTCGACCTAGATCAAGTGTGGAAGGTTTTCAATCCTCTGCTATCTCCAATTGTTACTCCTGAAAAACTTGAACTGCCTCCATTGCGTGAATTAATGCAATTATCCGACTCTCTCGGATATTTTGTAAAAGTAAAAGTAAGTCATGATAAGAAGGGAACCATGGAGCATGTTGAGATCCGTGTACAGTTGCCAAATGAACGATTGGTTCGAGAGGGAAAGGGACCAAATAAAAAATCTGCGAAAGGAGACGCTGCTTTTCAGTTGTTGAAGGATCTTGAGAAAAGGGGAATTTCATACAAGGGAAAAAAAATAATGGATTACAGTATTCCCAGTTGTCAAATTGAAGACCAACCCCCAAAGCCAGTAGCAATTAAAAAGCCCAAATTGGACAAAACTAACTCAGCCGCAAATGAATCTACTGGTGATCTGAAGGACATTTCCAGTAAAGCCTCTGATACTAGTGGTTCTATTCCAGTTGTTTCATCAATCAAAATGAATAAAAAGGGAGGACCCCGGAGCGAACTGTATGAAGTGTGCAAGAAAAAGTTGTGGCCATTGCCTTCCTTTGATTCAACAGAATATAAAGATAGAACTCTATTTGAATCGTGTAAAGGGCTGGAAGGAAGCAAAGGATTGAACTGCTTTGTGTCGAAAATAACTTTGGGCATACCAGGTTATGGTGATATAAAATGCCAAGGAGAAGCTAGAAGTGATAAGAAGAGCTCATATGACTCTGCTGCAGTCCAAGCGCTTTATGAGTTACAACGGCTTGGAAAAATTATGATTAAGATTGATGATGGCGATGTAGAATACCAAGGAGAAGCCACAAGTGGTATAAAGAGCTCACTTGACTCTGCTGCAGTCCAATAA 5193 0.4011 MDLSNDNMDSIMDSSNDNDDQNQTKNLKRKFDHLYAKPNAEQDSPSQEETLIANLVPRRDQLEAFEVAKKRNTIAIMDTGSGKTLIAILLIKETGQAIRSSGVKKLIVFLAPTVHLVNQAFVACAFTLQQYKNIKLNTDLQVEEYYGSKGVDTWNLKSWQKEINDNDVMVMTPQILLDAFRKAFLSIEMICLMVIDECHWASGNHPYAKIMAEFYHQANEKPKIFGMTASPVGKRGVSSTLVCEGQISDLENILDSQSYVVKDRTEMDVYIPSAKESCRFYDPARFHALSLKPKIEASWSKCDVLLSEFQSDYKDMDQKFKALHQRMSNELAKILYCLEDLGLLCAYEAAKICQQKFSKIHGECEVYRKANLQCVTIIEEVIKIIEESLHLADEMILDVEFDCSKAVDMGYISPKLLELIKLFETFGEPSQLLCLIFVERIITAKVIERFVKKVSQISHLTVAYVTGSNTSADALARKRQKEILDSFRSGKVNLLFTTDVLEEGIHVPNCSCVIRFDLPTTVCSYIQSRGRSRRANSQFILMLERGNLKQRNQLFDIIRSERSMNDAAVSKDHESNLRAFTVRKTESYCVDSTGASVTLDSSVSLINQYCEKLPRDKYSSAKPNFDSLPMEGGGHVCKLILPPNAAFQTLVGPSGKDVRQAKTLVCLEACKKLHQMGALNDHLVPFIEDPLEADNIIKNKESSAAAAAGAGTTKRKELHGTASVRALCGSWGDKPDGAKFHAYKFEFKCNIVSEIYSGFVLLVESKLDDDVGNIELDLYLISKMVKTSVISCGQVDLDAEQVTKAKSFHELFFNGLFGRLIRKSTTVQGEREFLLQKDTELLWSPKNSYLLLPLEKLNDICIRSLQIHWSAINSCASAIEFVRQRFSLVTEVSDDNSKIISPPCDIDNSKIISPPCDTSSSSDMECESTNMFHFANCVVDVSSVKDNVALAIHTGKVYCIIDVVDNSSAESPFDGNSDKSGAEDKMTFTQYFQKRYGITLRHPEQPLLRLKQGHNAHNLFLNVPEEADGGDKSSQVGPVAPKVPVHVHIPPELLCLLDVKRDVYKSMYLLPSLMYRIESLMLSSQLRAEINGHTDNFKIPSSLILEALTTLRCCEKFSMERLELLGDSVLKYAVSCHLYLKYPKKHEGHLSSLRQWAVRNSTLHKLGTDCNLQGYIRDSAFEPRRWIAPGQDCIHTVPCDCGLETLEVPLDVKFHTEDPKVVVGKLCDRGHRWMCSKTIADCVEALIGAYYVGGGLIASLHMMKWLGIDSGLEPSMVDKAITAASLHTYTPKVNEIASLEAKIGYEFSVKGLLVEATTHLSESEHGTGCCYERLEFLGDSVLDLLITWHLFQSHTEIDPGELTDLRSASVNNENFAQAAVRRNLHQHLLHSSGLLQSQILEYAKVISEPEDNAVPLQGIKAPKALGDLVESIAGAILIDTKLDLDQVWKVFNPLLSPIVTPEKLELPPLRELMQLSDSLGYFVKVKVSHDKKGTMEHVEIRVQLPNERLVREGKGPNKKSAKGDAAFQLLKDLEKRGISYKGKKIMDYSIPSCQIEDQPPKPVAIKKPKLDKTNSAANESTGDLKDISSKASDTSGSIPVVSSIKMNKKGGPRSELYEVCKKKLWPLPSFDSTEYKDRTLFESCKGLEGSKGLNCFVSKITLGIPGYGDIKCQGEARSDKKSSYDSAAVQALYELQRLGKIMIKIDDGDVEYQGEATSGIKSSLDSAAVQ 1730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g07335 1730 Pfam Type III restriction enzyme, res subunit 53 231 IPR006935 GO:0003677|GO:0005524|GO:0016787
Mepo3g07335 1730 Gene3D Ribonuclease III domain 1292 1464 IPR036389 GO:0004525|GO:0006396
Mepo3g07335 1730 Pfam Helicase conserved C-terminal domain 431 536 IPR001650 -
Mepo3g07335 1730 ProSitePatterns Ribonuclease III family signature. 1332 1340 IPR000999 GO:0004525|GO:0006396
Mepo3g07335 1730 ProSiteProfiles PAZ domain profile. 944 1027 IPR003100 GO:0005515
Mepo3g07335 1730 Pfam PAZ domain 950 1079 IPR003100 GO:0005515
Mepo3g07335 1730 FunFam Endoribonuclease dicer-like protein 52 301 - -
Mepo3g07335 1730 PANTHER DICER-RELATED 71 1539 - -
Mepo3g07335 1730 SMART ultradead3 53 256 IPR014001 -
Mepo3g07335 1730 CDD RIBOc 1312 1462 IPR000999 GO:0004525|GO:0006396
Mepo3g07335 1730 Gene3D Ribonuclease III domain 1085 1265 IPR036389 GO:0004525|GO:0006396
Mepo3g07335 1730 SMART riboneu5 1311 1464 IPR000999 GO:0004525|GO:0006396
Mepo3g07335 1730 SMART riboneu5 1102 1275 IPR000999 GO:0004525|GO:0006396
Mepo3g07335 1730 SUPERFAMILY RNase III domain-like 1096 1269 IPR036389 GO:0004525|GO:0006396
Mepo3g07335 1730 MobiDBLite consensus disorder prediction 1 48 - -
Mepo3g07335 1730 Gene3D - 407 569 IPR027417 -
Mepo3g07335 1730 Gene3D - 1618 1697 - -
Mepo3g07335 1730 MobiDBLite consensus disorder prediction 1557 1596 - -
Mepo3g07335 1730 SUPERFAMILY RNase III domain-like 1295 1461 IPR036389 GO:0004525|GO:0006396
Mepo3g07335 1730 FunFam Endoribonuclease dicer-like 1 1290 1462 - -
Mepo3g07335 1730 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 418 578 IPR001650 -
Mepo3g07335 1730 ProSiteProfiles Ribonuclease III family domain profile. 1083 1255 IPR000999 GO:0004525|GO:0006396
Mepo3g07335 1730 Pfam Ribonuclease III domain 1332 1440 IPR000999 GO:0004525|GO:0006396
Mepo3g07335 1730 Pfam Ribonuclease III domain 1120 1254 IPR000999 GO:0004525|GO:0006396
Mepo3g07335 1730 SMART helicmild6 448 536 IPR001650 -
Mepo3g07335 1730 Gene3D Dicer dimerisation domain 597 695 IPR038248 -
Mepo3g07335 1730 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1500 1535 IPR014720 -
Mepo3g07335 1730 CDD SF2_C_dicer 411 543 - -
Mepo3g07335 1730 MobiDBLite consensus disorder prediction 1574 1596 - -
Mepo3g07335 1730 ProSiteProfiles Ribonuclease III family domain profile. 1296 1441 IPR000999 GO:0004525|GO:0006396
Mepo3g07335 1730 FunFam Endoribonuclease dicer-like 1 406 569 - -
Mepo3g07335 1730 Gene3D paz domain 925 1059 - -
Mepo3g07335 1730 SUPERFAMILY PAZ domain 944 1057 IPR036085 GO:0005515
Mepo3g07335 1730 FunFam Dicer-like 104 1078 1267 - -
Mepo3g07335 1730 MobiDBLite consensus disorder prediction 1 21 - -
Mepo3g07335 1730 FunFam Endoribonuclease dicer-like 1 597 694 - -
Mepo3g07335 1730 CDD RIBOc 1102 1266 IPR000999 GO:0004525|GO:0006396
Mepo3g07335 1730 SMART PAZ_2_a_3 921 1082 IPR003100 GO:0005515
Mepo3g07335 1730 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 540 IPR027417 -
Mepo3g07335 1730 CDD DEXHc_dicer 57 263 - -
Mepo3g07335 1730 MobiDBLite consensus disorder prediction 22 37 - -
Mepo3g07335 1730 Gene3D - 52 297 IPR027417 -
Mepo3g07335 1730 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 64 249 IPR014001 -
Mepo3g07335 1730 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 602 693 IPR005034 GO:0016891
Mepo3g07335 1730 Pfam Dicer dimerisation domain 602 688 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g07335 Mepo-Chr3 86813374 86826507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g07335 433 534 Eukaryotic Initiation Factors Gene Family AT1G72730 37.736 6.33e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g07335 K11592 - gmx:100806831 2300.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g07335 3 86813374 86826507 Mepo3g07335 3 86813374 86826507 ECH
Mepo1g00545 1 5226433 5237322 Mepo3g07335 3 86813374 86826507 ECH