Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g07249 ATGATCAAGATTCCAAACCTTAAAATCCCTAAATGGAACACAACACAATACGAGGAAGTACCATTCTTCAACCATTTCATTTCAAACGACATAGACACGCACACTTCATGCATGACCGAAGATTTCGACTTACCAATCCATGTTTTCTCAACAGACCAATTCCGAATGTTCGAATTCAAAGTTCGAAAATGCCAACGTGGTAGATCTCATGACTGGACGGATTGTCCATACTCTCATCCCGGCGAAAAAGCTCGCCGGAGAGACCCTAAAAAATACAACTACTCCGGCAATCCTTGCCCGGAGTTTCGCAAATTAGGAAACTGCACCAAAGGTGATTCTTGCCACTTTGCTCATGGTGTTTTTGAATGCTGGCTTCATCCTTCTCGTTACAGAACTCAGCTTTGTAACGACGGAACCCTTTGCCGGCGACGAGTTTGCTTCTTTGCTCACACCATTGATCAACTCCGTGTCTCAAATAACGTTTCACCAGAATCATTTGTTTCATCTCCTACTTCAGTTCTTGATTCTTCTCCGAGGAAACATCGATACGGTGTCCCTCCTGTGAACGTGAGGGAATTAGTTGGCTTCATGAGGAGTGTTAGGGTTGATGAATGGAGTCCGGTATCTGAGATGGGTTCTGTGTTTGGTTCTCCACGAGGTGGTTTTTTGAGTCTTCCATCAAACTATGAAGGGGTTGCTATGGAGAGGGTGGAATCAGGAAGAGATCTTAGAGCAAAAATCTATGCGAAATTTGGTAGATTGAACTCAAACGACGGTGTTGCTTCGGTCCCTATTCCTGATATTGGATGGGTTGCGGAACTTGTTAACTGA 831 0.4416 MIKIPNLKIPKWNTTQYEEVPFFNHFISNDIDTHTSCMTEDFDLPIHVFSTDQFRMFEFKVRKCQRGRSHDWTDCPYSHPGEKARRRDPKKYNYSGNPCPEFRKLGNCTKGDSCHFAHGVFECWLHPSRYRTQLCNDGTLCRRRVCFFAHTIDQLRVSNNVSPESFVSSPTSVLDSSPRKHRYGVPPVNVRELVGFMRSVRVDEWSPVSEMGSVFGSPRGGFLSLPSNYEGVAMERVESGRDLRAKIYAKFGRLNSNDGVASVPIPDIGWVAELVN 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g07249 276 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 97 119 IPR000571 GO:0046872
Mepo3g07249 276 SUPERFAMILY CCCH zinc finger 92 123 IPR036855 GO:0046872
Mepo3g07249 276 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Mepo3g07249 276 SMART c3hfinal6 129 152 IPR000571 GO:0046872
Mepo3g07249 276 PANTHER UNKEMPT FAMILY MEMBER 46 275 IPR045234 -
Mepo3g07249 276 Gene3D - 89 164 - -
Mepo3g07249 276 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g07249 Mepo-Chr3 86153494 86154817 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g07249 43 156 C2H2 Transcription Factor Family AT5G12850 62.281 5.07e-51 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mepo3g07249 zf-CCCH 2e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g07249 - K23048 mtr:11430634 562.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g07249 3 86153494 86154817 Mepo3g07249 3 86153494 86154817 ECH