Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g07234 ATGGATTTCAAAATGGATTCTGATAAAGCTAAGCTTTTCGTCGGTGGCATTTCTCGGGAAACCACTGAAGACACTCTCAAACACCATTTCTCCAAATACGGTGACGTTTTGCATTCAACAATCTCTTTTGACCGCACCACCCAAATCCCTAGAGGTTTTGGTTTCGTTACTTTCTCTGATATCTCTTCTGCTCACAATGCCCTTCAAGATACCCATGTCATTCTTGGACGAAAGGTAGAAGTTAGAAAAGCAATACCGAGAAGTGAACAACTACAACAAAATCAATTACAGAATAGAGGGGGGAATAGCTATAGTGGTTATGAATGTGGGAATGAACATATTAGGACTAAGAAGATTTTTGTTGGTGGTTTACCTGCTAATCTGTCTGTGGAGGAGTTTAAGAGGTACTTTGAGAGGTTTGGTCGAGTAACTGATGTGGTGGTGATGCAGGATAGTGTAACTCATAGGCCGAGGGGGTTTGGGTTCATTACTTTTGATTCTGAAGACTCGGTGCAAAGTGTTATGATGAGAAGTTTTCATGACTTGAATGGTAGGCAGGTTGAGGTTAAGAGGGCTGTTCCGAGGGAGGGGAATGCTGGTTCTGAGGGTTTTAGTAAAATAAGATATAAGAGTGATAGAGGAGCAGCTGAAAGTTTTCACCATTCTAGTCCCGGGAACATGTTTCCTGCCATTGCTCCTTTACCTTTGTCTACTAGTGATGGAGTGTATGGATACGGATCAAATCCCTATGGTTGCAGGTACCCTATGGGTGGGTATGGGTATGGGGGGAATGGATATGTTGCTCCATCATATGTTTATAGGAACTTATGGTATGGTGGGCAAATAGTAACTGGTCCTTAG 861 0.4251 MDFKMDSDKAKLFVGGISRETTEDTLKHHFSKYGDVLHSTISFDRTTQIPRGFGFVTFSDISSAHNALQDTHVILGRKVEVRKAIPRSEQLQQNQLQNRGGNSYSGYECGNEHIRTKKIFVGGLPANLSVEEFKRYFERFGRVTDVVVMQDSVTHRPRGFGFITFDSEDSVQSVMMRSFHDLNGRQVEVKRAVPREGNAGSEGFSKIRYKSDRGAAESFHHSSPGNMFPAIAPLPLSTSDGVYGYGSNPYGCRYPMGGYGYGGNGYVAPSYVYRNLWYGGQIVTGP 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g07234 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 175 IPR000504 GO:0003723
Mepo3g07234 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 78 IPR000504 GO:0003723
Mepo3g07234 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 194 IPR000504 GO:0003723
Mepo3g07234 286 SUPERFAMILY RNA-binding domain, RBD 114 202 IPR035979 GO:0003676
Mepo3g07234 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 86 IPR000504 GO:0003723
Mepo3g07234 286 Gene3D - 2 115 IPR012677 -
Mepo3g07234 286 Gene3D - 116 205 IPR012677 -
Mepo3g07234 286 SMART rrm1_1 118 190 IPR000504 GO:0003723
Mepo3g07234 286 SMART rrm1_1 11 82 IPR000504 GO:0003723
Mepo3g07234 286 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 5 270 - -
Mepo3g07234 286 SUPERFAMILY RNA-binding domain, RBD 6 109 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g07234 Mepo-Chr3 85975181 85976179 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g07234 12 286 Eukaryotic Initiation Factors Gene Family AT1G49760 23.860 4.68e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g07234 K14411 - gmx:100816822 371.703