Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g07207 ATGGAAACACTTGGAGCTATCCCTGATGATGGTGAATGGGAATGCTTCCGCAGAATATTTGCAACTGAAGACCATGATGACTCTCCACCACAATTGCTTGATCAAACCTCGCTTCTGCTCGGAGAAAATAATGGGAACTTTGGAGTACAATCCATGTTTTGCTCCCCTTCTGAAGCTGAGGGAAACATGAATACTAATGTGTTTTATTCTTTTGATTCTCACATCAACTATAATTCACAAGAAAGTAATCATAGTACTCAAGGTCACACAAACTACTATTTTGATTGTTCTGATCATGTGCTAGCTAATAATAATGACAGAACAGAGAATTTTGATCACAATCAAGTCCAACCTAAGTTGAAGTTGAAAAGGATGCTTGATGTGCCAGAATTTCAGGTACATGTAGAAGATAAGATAAACTCATGTGGGAACCCTAAGAAAAAACCTCGTGCTGCAAAAGATGTGCAAAGATGCATGAAGAATGCAGAGTCAAAGAAGAGCAAGAAGGTTGATAGAAATGAGAACAAGGCAGAAGAAGCCAATGCAAGTGTAGATGGACATACCTCTAGTGGTTATACTTCAGAGGAACAAAACATGTGTGAGGAAAACAGTGGAGGAGCTTCTGCAGCATCTAAATCAACTGTGTCTCTCAACTGCAATGGAAAGAAAAGAGCTAGTAGAGGATCAGCAACAGATCCTCAAAGCCTTTATGCAAGGAAAAGAAGAGAGAAGATAAACGAGAGACTCAGAACTCTACAGAATCTTGTACCAAATGGAACAAAGGTTGATATAAGCACAATGCTTGAAGATGCAATCCAATATGTGAAATTTCTGCAGCTCCAAATCAAGCTTCTAAGCTCTGATGATCTGTGGATGTACGCCCCAATTGCTTATAATGGACTTGACATTGGATTCAATCTCAACAGGAAGATTTCTCCACCACCATGA 948 0.3945 METLGAIPDDGEWECFRRIFATEDHDDSPPQLLDQTSLLLGENNGNFGVQSMFCSPSEAEGNMNTNVFYSFDSHINYNSQESNHSTQGHTNYYFDCSDHVLANNNDRTENFDHNQVQPKLKLKRMLDVPEFQVHVEDKINSCGNPKKKPRAAKDVQRCMKNAESKKSKKVDRNENKAEEANASVDGHTSSGYTSEEQNMCEENSGGASAASKSTVSLNCNGKKRASRGSATDPQSLYARKRREKINERLRTLQNLVPNGTKVDISTMLEDAIQYVKFLQLQIKLLSSDDLWMYAPIAYNGLDIGFNLNRKISPPP 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g07207 315 Gene3D - 226 286 IPR036638 GO:0046983
Mepo3g07207 315 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 45 287 IPR045843 GO:0003700|GO:0006355
Mepo3g07207 315 SMART finulus 235 284 IPR011598 GO:0046983
Mepo3g07207 315 Pfam Helix-loop-helix DNA-binding domain 239 279 IPR011598 GO:0046983
Mepo3g07207 315 MobiDBLite consensus disorder prediction 182 213 - -
Mepo3g07207 315 FunFam Basic helix-loop-helix transcription factor 230 287 - -
Mepo3g07207 315 Coils Coil 159 179 - -
Mepo3g07207 315 MobiDBLite consensus disorder prediction 139 181 - -
Mepo3g07207 315 MobiDBLite consensus disorder prediction 139 213 - -
Mepo3g07207 315 CDD bHLH_AtIND_like 230 292 - -
Mepo3g07207 315 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 229 278 IPR011598 GO:0046983
Mepo3g07207 315 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 229 294 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g07207 Mepo-Chr3 85675603 85677125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g07207 150 305 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 59.119 1.83e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mepo3g07207 HLH 1.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g07207 - - mtr:25489956 587.415