Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g07182 ATGGGGAGAGTTAAGCTTCAGATCAAAAAGATTGAGAACATAACAAATAGACAGGTCACTTTCTCAAAGAGAAGAAATGGTTTAATCAAGAAAGCTTATGAACTTTCTGTTCTATGTGATGTTGATGTCGGTCTCATCATGTTTTCTCCATCTGGGAGAGCCACTCTCTTCTCTGGCAATAGAAGCATCGAAGAAATCCTTGAACGATATATAAATCTTCCAGACAGTGAACGTGGAAGGATGCATAATCAAGAGCACATCCGAAAGGTGCTTAGAAAGTTGAAAGCTGAAACTGATCAGATATGCCAAGCTCCTAGCCCTACGATTACAGACTTCCAACTAAAGGAGGTTCAAAGAGAAATATTTATTTGCAAGTCTCAATTGGAAGAGATGGAGAATCGACTAAGGATATTTGAAGGAGATCCTTCAGAGATTACCACATTGTGTGAGGCGGAATATCGTGAACAAGTCCTACAGGAAACTCTAAAACAAGTGCAACTGCGAAAAGTACATCTTACAAAAACTGTAGATGTAGATGGATTTGTTGCTGGAACTACAGGGAATGCATTAGGCTGGTTTCCTCAGGGAGATACCAATGATCAGATTCTGAACTTTGCCAATGCTTACGGCCCTTCTCCTCTCAGTGATCAACAATCACTGAGTACTGTTGTTGATATGGTAACGCCAACTTCGACCCTTCTGAACTCTGCAAACGTCGACCACACTTGTCAAATTAGTCCCAGGGATGCTGCAGAGGCTGACATTAATAATACACTATGTCCTCAGTTTGGACAAGTAATGGACACCAATCTGTCATCTTGGGAGCACCTCCATCAATTAGAGAGTGGACCGTTGTCAGTTGCAGAGACAAGAGAAGGGCAACTGCTTGAGCAGTATTTTTCTCAATTTAGTCCGTCAAATATCTTAATAACTAATCATGGTCAACTTCAAACATGA 957 0.4096 MGRVKLQIKKIENITNRQVTFSKRRNGLIKKAYELSVLCDVDVGLIMFSPSGRATLFSGNRSIEEILERYINLPDSERGRMHNQEHIRKVLRKLKAETDQICQAPSPTITDFQLKEVQREIFICKSQLEEMENRLRIFEGDPSEITTLCEAEYREQVLQETLKQVQLRKVHLTKTVDVDGFVAGTTGNALGWFPQGDTNDQILNFANAYGPSPLSDQQSLSTVVDMVTPTSTLLNSANVDHTCQISPRDAAEADINNTLCPQFGQVMDTNLSSWEHLHQLESGPLSVAETREGQLLEQYFSQFSPSNILITNHGQLQT 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g07182 318 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Mepo3g07182 318 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mepo3g07182 318 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 55 IPR002100 GO:0003677|GO:0046983
Mepo3g07182 318 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Mepo3g07182 318 FunFam Agamous-like MADS-box protein AGL66 isoform A 14 79 - -
Mepo3g07182 318 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 188 - -
Mepo3g07182 318 Coils Coil 114 134 - -
Mepo3g07182 318 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mepo3g07182 318 SUPERFAMILY SRF-like 2 82 IPR036879 GO:0003677|GO:0046983
Mepo3g07182 318 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mepo3g07182 318 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mepo3g07182 318 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g07182 Mepo-Chr3 85450607 85452993 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g07182 1 210 Type I MADS-box Gene Family AT1G77980 42.308 3.22e-53 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mepo3g07182 SRF-TF 1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g07182 - - tpra:123918189 503.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g07182 3 85450607 85452993 Mepo3g07182 3 85450607 85452993 ECH