Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g07163 ATGGCTCAACACTACAACTCAATGTTACTTTTGGATACGTTGTACTGCTCAGAAGAACATTGGGAGGAACAAGATGAGTTAGAGTTAGAGTACGATAATGTTTCCTTAAACAACACAACAATAAACACCACTACATGTTCTTTGTTAGAAACCGACATGTTTTGGGACGATGAAGAACTGAAATCACTTCTAAACAAAGAACAACAAAACCCACTTTACATCTTTCTTGAAACCAACCCTGTTTTGGAAACTGCTAGAAGAGAATCTATTGAATGGATTCTGAAAGTGAATGCTCATTACTCTTTCTCAGCTCTTACTGCTGTTCTTGCTGTCAACTACCTTGATAGGTTTCTCTTCAGCTTTCGTTTTCAGAATGAGAAGCCATGGATGACTCAGCTTGCTGCTGTTGCTTGTCTTTCTCTTGCTGCTAAAATGGAAGAGACCCATGTTCCTCTTTTACTAGATCTTCAAGTTGAAGAGAGTAGATACTTGTTTGAAGCAAAGACGATTAAAAAGATGGAGATTTTGATACTTTCAACTCTTGGATGGAAAATGAGTCCAGCAACACCTCTTTCTTTTATTGATTATATCATAAGAAGACTTGGATTGAAAGATCATCTTCGTTGGGAGTTTCATAAGAGATGTGAAGGTGTTCTTCTCTCTGTCATTAGATCAGATTCTAAGTTTATGAGTTATCTACCTTCTGTTTTGGCAACTGCTACAATGGTTCATGTTTTCAACAGCGTGGAGCCTAGTTTAGGAGATGAATATCAAAGCCAGCTTCTTGGTATTCTTGGAATAAAAAAAGACAAGGTGGATGAATGTGGGAAGCTATTGTTGAAACTGTGGTCAGGGTATGAAGAGGGGAATCAATGCAACAAACGCAAGTTTGGGTCAATTCCAAGTAGTCCAAAAGGTGTAATGGAAATGTCGTTTAGCTGTGATAATTCCAATGATTCATGGGCTATAGCAGCAACAGCTTCTGTATCATCTTCACCAGAGCCTTTGTCCAAGAAGATCAGAACTCAAGACCAGTTTTTATTAAACTCTTCATAG 1056 0.3807 MAQHYNSMLLLDTLYCSEEHWEEQDELELEYDNVSLNNTTINTTTCSLLETDMFWDDEELKSLLNKEQQNPLYIFLETNPVLETARRESIEWILKVNAHYSFSALTAVLAVNYLDRFLFSFRFQNEKPWMTQLAAVACLSLAAKMEETHVPLLLDLQVEESRYLFEAKTIKKMEILILSTLGWKMSPATPLSFIDYIIRRLGLKDHLRWEFHKRCEGVLLSVIRSDSKFMSYLPSVLATATMVHVFNSVEPSLGDEYQSQLLGILGIKKDKVDECGKLLLKLWSGYEEGNQCNKRKFGSIPSSPKGVMEMSFSCDNSNDSWAIAATASVSSSPEPLSKKIRTQDQFLLNSS 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g07163 351 ProSitePatterns Cyclins signature. 86 117 IPR006671 -
Mepo3g07163 351 Gene3D - 63 276 - -
Mepo3g07163 351 SMART cyclin_7 91 179 IPR013763 -
Mepo3g07163 351 CDD CYCLIN_AtCycD-like_rpt1 85 183 - -
Mepo3g07163 351 Gene3D - 70 186 - -
Mepo3g07163 351 FunFam D3-type cyclin 79 186 - -
Mepo3g07163 351 SMART Cyclin_C_2 188 315 IPR004367 -
Mepo3g07163 351 CDD CYCLIN_AtCycD-like_rpt2 189 279 - -
Mepo3g07163 351 SUPERFAMILY Cyclin-like 53 185 IPR036915 -
Mepo3g07163 351 PANTHER CYCLINS 60 280 IPR039361 -
Mepo3g07163 351 Pfam Cyclin, N-terminal domain 66 186 IPR006671 -
Mepo3g07163 351 SUPERFAMILY Cyclin-like 170 302 IPR036915 -
Mepo3g07163 351 Pfam Cyclin, C-terminal domain 189 314 IPR004367 -
Mepo3g07163 351 FunFam CYCLIN D32 187 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g07163 Mepo-Chr3 85310130 85312080 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g07163 2 345 Core Cell Cycle Gene Families AT5G67260 48.148 1.06e-94 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g07163 K14505 - aprc:113874132 446.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g07163 3 85310130 85312080 Mepo1g01853 1 18473701 18475709 ECH
Mepo3g07163 3 85310130 85312080 Mepo4g04607 4 55645255 55647602 ECH
Mepo3g07163 3 85310130 85312080 Mepo3g07163 3 85310130 85312080 ECH