Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g07161 ATGGGAAACAGCAATCCTTTGAGAAATGATGAATTATCATCAAATGGGACATTCCAATTTCCTCAACAAATGATGATAAGTGACAACAACAATACTAATAATAATATCGTTTGTGGTTCTAATGTTGCACCTAACTCGTTTGTGCGTAATAATCACCATGCATATGGATCTCTATATTCTTATGTCAGAAACAACTCTCTTGAAACCGGTAGAAACATCAAGAAATCACGTTTGAATGAAGAGATTGAAATCAGAGGATCAAATGCAAGGGGAGATATGTCTTCAATATGGTCTAATGTTCGCAAGCAGCCTATGCCTCTATCAGGTGCTTCTCTTTCTGCTTGTAACAACAACAACAGCAAGCTTTTGACATTAAAGGAGAATGTAGTAAAAGTTGAACAACGTCAAATTTTAAACATCAAGACGACTCTTTTCGTTAATCTCATTGATGATTCGATTTACGGGTCGAATATGCAAGAACATGATTTTTTTGCGACCTCCAAGACTTTTACATGCAAGATTTGCGGGAGAGTGTTTTCTTCTGCACGAGCCTTAGAAGGACACAAAAAGGCTCATAAAGGTGAGCCTCTTTTCATCGATCTCACCGATAATTCGATTCGTGGGTCGGTAATGCAAGAAGATAATTTTTATGCTACCTCAAATACATTTTCTGGCATCATTTGTAAGAGAAAGTTTTTGTCTTCACGAGCTTTAGGAGGACACAAAAAGGTTCATAAGGGTAAGCGTGCACCTACAAATCATCAACAAGAAATACAAGAGACGATAGATTTTTCGTCTATTGATGGATTGAAGACCGAGGGTCTTATGATGAAATTAGAAGATAGTGTTGGAGAGTCTTCTTCTATAAATGTTGATATGAAATCAAATCCAATAGTAGACAAGTCGAATATGGTTGGCACATGTGGTGATCATCATCCTACCATCAAGGAAGAAGCTTGA 960 0.3708 MGNSNPLRNDELSSNGTFQFPQQMMISDNNNTNNNIVCGSNVAPNSFVRNNHHAYGSLYSYVRNNSLETGRNIKKSRLNEEIEIRGSNARGDMSSIWSNVRKQPMPLSGASLSACNNNNSKLLTLKENVVKVEQRQILNIKTTLFVNLIDDSIYGSNMQEHDFFATSKTFTCKICGRVFSSARALEGHKKAHKGEPLFIDLTDNSIRGSVMQEDNFYATSNTFSGIICKRKFLSSRALGGHKKVHKGKRAPTNHQQEIQETIDFSSIDGLKTEGLMMKLEDSVGESSSINVDMKSNPIVDKSNMVGTCGDHHPTIKEEA 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g07161 319 Gene3D Classic Zinc Finger 165 260 - -
Mepo3g07161 319 Pfam C2H2-type zinc finger 170 194 - -
Mepo3g07161 319 Pfam C2H2-type zinc finger 227 247 - -
Mepo3g07161 319 SUPERFAMILY beta-beta-alpha zinc fingers 167 198 IPR036236 -
Mepo3g07161 319 ProSitePatterns Zinc finger C2H2 type domain signature. 172 192 IPR013087 -
Mepo3g07161 319 PANTHER ZINC FINGER PROTEIN 4-LIKE 216 259 - -
Mepo3g07161 319 SMART c2h2final6 223 245 IPR013087 -
Mepo3g07161 319 SMART c2h2final6 170 192 IPR013087 -
Mepo3g07161 319 ProSiteProfiles Zinc finger C2H2 type domain profile. 170 197 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g07161 Mepo-Chr3 85284204 85286906 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g07161 163 245 C2H2 Transcription Factor Family AT1G49900 31.325 3.08e-09 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo3g07161 zf-C2H2_6 8.8e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g07161 - K09228 cam:105852312 63.5438