Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g07154 ATGGCGCAAAATCACGAGAATGTGAACAATGACGTGGCGGCGGCTCCGGTTCCGAATCATCTGACAACGACGTCGTTGTACGTCGGAGATCTCGATCACGACGTCACCGATTCACAGCTTTACGATCTTTTCAACCAGATCGGTCAAGTTGTTTCTGTTCGGATCTGTAGGGATTTGGCTTCTCAACAATCCCTAGGTTATGGTTACGTCAATTTCAGTAACCCTCATGACGCTGCAAAGGCGATGGATGTGCTAAATTTCACTCCGCTGAACAACAAACCGATTCGGATTATGTATTCTCATCGCGACCCTAGTGTTCGGAAGAGTGGTGCTGCTAATATTTTCATCAAGAACCTGGACAGGGCAATTGATCATAAAGCTTTATATGATACCTTTTCGATTTTTGGAAATATCCTTTCTTGCAAGATAGCAATGGATGCTTCTGGTCTTTCTAAAGGCTATGGTTTTGTGCAATTTGAGAATGAAGAATCTGCACAAAGTGCTATTGACAAGTTAAATGGCATGCTGCTCAACGATAAACCGGTCTATGTTGGTCATTTCCAAAGGAAGCAGGATAGAGATAACGCTTTGAGTAATGCGAAGTTTAATAATGTCTATGTGAAAAACCTATCAGAGTCGGTTACAGATGATGACTTGAAGAACACTTTTGGAGAATATGGAACTATTACTAGTGCTGTAGTAATGAGAGATGTAGATGGTAAATCAAAATGTTTTGGTTTTGTCAATTTTGAAAATGCAGATGCTGCTGCTAAAGCCGTGGAGGCACTCAATGGAAAGAAATTTGATGACAAGGAGTGGTATGTTGGAAAAGCCCTAAAAAAATATGAAAGGGAGCTTGAGCTGAAAGAAAGGCATGAGCAGAGTATGAAGGAAACTGTTGACAAGTTTTATGGTGCAAACTTGTATCTCAAGAACTTGGATGACAGCGTCACTGATGAAAAACTTAGCGAACTGTTCTCCGAGTTTGGTACAGTAACTTCATGCAAGATTCTGCGAGATCCACAAGGAATTAGTAGGGGATCTGGATTTGTTGCCTTTTCAATTCCCGAGGAAGCAACTCGAGCTCTTGCTGAGATGAATGGCAAAATGGTTGCGGGCAAACCTCTCTATGTTGCTCCTGCACAGAAAAAGGAAGAGAGAAAAGCAAGGTTACAGGCACAATTTTCGCAAGTGAGGCCAGTTACAATGGCTCCTATTGCACCTCGAATGCCATTTTACCCTGCGGGTGTTCCTGGGATGGGACAACAAATTATGTATGGCCAAGCTCCTCCAGCCTTCATATCTCAGGCTGGATTTGGTTACCCGCAGCAACTGGTTCCTGGAATGAGACCGGGTGGTGCTCCAATGCCAAACTTCTTCATGCCCATGGTTCAGCAGGGTCAACAAGGTCAGCGTCCAGGCGGACGGCGGGGAGCAGGTCCTATGCAACAACTCCCGCATTCATTGCCAATGATGCAGCAACAGATGCATCCAAGAGGACGTGTCTATCGATATCCTACTGGTCGCAACCCACAAGGTATTCCGATGCCAGGAGTAGCTGGAGGAACGCCCATGCAGGCTCTGGCTACAGCCCTTGCAAATGCTCCTCCTGAACAGCAGAGGACTATGCTTGGTGAAGTTTTATACCCTCTAGTAGAGAAGATTGAGCATGCCGGAGCTGCAAAGGTTACTGGTATGCTTTTGGAGATGGACCAGCCTGAGGTGTTACATCTGATTGAGTCACCAGAGGCTCTCAAGACTAAAGTTGCTGAGGCCGTGGATGTGTTGAGAAATGTTGCACAGCAGCAATCAAACAGCCCAACTGATCAACTAGCTTCTCTCTCTCTTAACGACAATCTTGAGTCTTAG 1869 0.4521 MAQNHENVNNDVAAAPVPNHLTTTSLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAMDVLNFTPLNNKPIRIMYSHRDPSVRKSGAANIFIKNLDRAIDHKALYDTFSIFGNILSCKIAMDASGLSKGYGFVQFENEESAQSAIDKLNGMLLNDKPVYVGHFQRKQDRDNALSNAKFNNVYVKNLSESVTDDDLKNTFGEYGTITSAVVMRDVDGKSKCFGFVNFENADAAAKAVEALNGKKFDDKEWYVGKALKKYERELELKERHEQSMKETVDKFYGANLYLKNLDDSVTDEKLSELFSEFGTVTSCKILRDPQGISRGSGFVAFSIPEEATRALAEMNGKMVAGKPLYVAPAQKKEERKARLQAQFSQVRPVTMAPIAPRMPFYPAGVPGMGQQIMYGQAPPAFISQAGFGYPQQLVPGMRPGGAPMPNFFMPMVQQGQQGQRPGGRRGAGPMQQLPHSLPMMQQQMHPRGRVYRYPTGRNPQGIPMPGVAGGTPMQALATALANAPPEQQRTMLGEVLYPLVEKIEHAGAAKVTGMLLEMDQPEVLHLIESPEALKTKVAEAVDVLRNVAQQQSNSPTDQLASLSLNDNLES 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g07154 622 SMART rrm1_1 113 185 IPR000504 GO:0003723
Mepo3g07154 622 SMART rrm1_1 307 379 IPR000504 GO:0003723
Mepo3g07154 622 SMART rrm1_1 204 276 IPR000504 GO:0003723
Mepo3g07154 622 SMART rrm1_1 25 98 IPR000504 GO:0003723
Mepo3g07154 622 Coils Coil 279 299 - -
Mepo3g07154 622 Gene3D - 106 192 IPR012677 -
Mepo3g07154 622 SUPERFAMILY PABC (PABP) domain 490 615 IPR036053 GO:0003723
Mepo3g07154 622 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 102 IPR000504 GO:0003723
Mepo3g07154 622 FunFam Polyadenylate-binding protein 289 394 - -
Mepo3g07154 622 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 306 383 IPR000504 GO:0003723
Mepo3g07154 622 Gene3D - 521 603 - -
Mepo3g07154 622 Pfam Poly-adenylate binding protein, unique domain 532 596 IPR002004 GO:0003723
Mepo3g07154 622 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 25 597 IPR006515 GO:0003723
Mepo3g07154 622 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 280 IPR000504 GO:0003723
Mepo3g07154 622 Gene3D - 193 289 IPR012677 -
Mepo3g07154 622 Gene3D - 290 396 IPR012677 -
Mepo3g07154 622 SUPERFAMILY RNA-binding domain, RBD 24 193 IPR035979 GO:0003676
Mepo3g07154 622 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 524 601 IPR002004 GO:0003723
Mepo3g07154 622 FunFam Polyadenylate-binding protein 11 109 - -
Mepo3g07154 622 MobiDBLite consensus disorder prediction 600 622 - -
Mepo3g07154 622 FunFam Polyadenylate-binding protein 110 193 - -
Mepo3g07154 622 FunFam Polyadenylate-binding protein 521 602 - -
Mepo3g07154 622 CDD RRM4_I_PABPs 305 383 - -
Mepo3g07154 622 SUPERFAMILY RNA-binding domain, RBD 199 286 IPR035979 GO:0003676
Mepo3g07154 622 SMART rrm2_1 307 379 IPR003954 GO:0003676
Mepo3g07154 622 SMART rrm2_1 113 185 IPR003954 GO:0003676
Mepo3g07154 622 SMART rrm2_1 204 276 IPR003954 GO:0003676
Mepo3g07154 622 SMART rrm2_1 25 98 IPR003954 GO:0003676
Mepo3g07154 622 CDD RRM2_I_PABPs 110 186 IPR045305 -
Mepo3g07154 622 CDD RRM1_I_PABPs 25 104 IPR034364 -
Mepo3g07154 622 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Mepo3g07154 622 Gene3D - 2 105 IPR012677 -
Mepo3g07154 622 PANTHER RNA BINDING PROTEIN 23 86 - -
Mepo3g07154 622 FunFam Polyadenylate-binding protein 194 288 - -
Mepo3g07154 622 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 182 IPR000504 GO:0003723
Mepo3g07154 622 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 205 273 IPR000504 GO:0003723
Mepo3g07154 622 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 308 376 IPR000504 GO:0003723
Mepo3g07154 622 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 96 IPR000504 GO:0003723
Mepo3g07154 622 SUPERFAMILY RNA-binding domain, RBD 298 393 IPR035979 GO:0003676
Mepo3g07154 622 SMART poly_2 536 599 IPR002004 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g07154 Mepo-Chr3 85203341 85211520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g07154 24 617 Eukaryotic Initiation Factors Gene Family AT4G34110 68.614 0.0 810
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g07154 K13126 - csin:114281995 944.495