Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g07082 ATGGAATTTGATGAACACGAAGACCTAGAGGAGGAAGAGGAGGAAGAAGAAGAAGAAATGGGGTTCCCTGTTACGCCGGTGGCATGTTACGACTCGCTTGGAAACTCAGGAGTAAGGTCCAAAAATGGCGGTGGAATCGGTTCAGAGGACGGAGGAGCAGCCACCGCTATAGGCGGTGGTGTCAAAATTGGGCCAGCTGGAACGGTCAGATACAAAGAATGTCAAAAGAATCACGCCGTCAGCATAGGCGGTCACGCCGTTGATGGATGTTGCGAGTTTTTAGCTGCCGGAGAAGAAGGAACACTGGAAGCGGTGACTTGTGCTGCTTGTAACTGTCACCGGAACTTTCACCGCAAAGAAATCGACGGTGAATTCACTCCCCAGCGGTCTCATCATCCTCAACACCACCACCATCAATTATCACCTTACTACCACCGTGCAGCGTTACCTCCTCCGCCTGGTTTCCACCACCACTCCGTAACTCCACCGATATCACATCATCGTCCTTTAGCTCTTCCACCTGCTGCATCGAGTCGGGGATTCAGTAGAGAAGAAGATAACGTGTCAAATCCAAGCAGCAGCGGAGGTGGTGGTGGTAGTGGTGGCGGAAGTGGAACGAAGAAAAGGTTTAGAACAAAATTCACGCAGGAACAAAAGGATAAGATGCTTGCATTTGCGGAGAAAATTGGGTGGAGAATTCAGAAGGAAGAAGAAGGTGCAATTGAACAATTCTGTGCTGAGAATTTTATCAAGAGACATGTGCTTAAGGTTTGGATGCACAATAACAAGCACACTCTTGAAAAGTATGCTAGGGAAGAATGCAGATAA 828 0.4843 MEFDEHEDLEEEEEEEEEEMGFPVTPVACYDSLGNSGVRSKNGGGIGSEDGGAATAIGGGVKIGPAGTVRYKECQKNHAVSIGGHAVDGCCEFLAAGEEGTLEAVTCAACNCHRNFHRKEIDGEFTPQRSHHPQHHHHQLSPYYHRAALPPPPGFHHHSVTPPISHHRPLALPPAASSRGFSREEDNVSNPSSSGGGGGSGGGSGTKKRFRTKFTQEQKDKMLAFAEKIGWRIQKEEEGAIEQFCAENFIKRHVLKVWMHNNKHTLEKYAREECR 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g07082 275 Gene3D - 192 268 - -
Mepo3g07082 275 MobiDBLite consensus disorder prediction 1 21 - -
Mepo3g07082 275 NCBIfam homeobox domain, ZF-HD class 207 263 IPR006455 -
Mepo3g07082 275 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 57 266 - -
Mepo3g07082 275 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 70 121 IPR006456 -
Mepo3g07082 275 MobiDBLite consensus disorder prediction 125 208 - -
Mepo3g07082 275 FunFam Zinc-finger homeodomain protein 2 199 268 - -
Mepo3g07082 275 SUPERFAMILY Homeodomain-like 193 268 IPR009057 -
Mepo3g07082 275 MobiDBLite consensus disorder prediction 1 25 - -
Mepo3g07082 275 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 71 120 IPR006456 -
Mepo3g07082 275 MobiDBLite consensus disorder prediction 182 200 - -
Mepo3g07082 275 Pfam ZF-HD protein dimerisation region 69 121 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g07082 Mepo-Chr3 84504601 84506237 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g07082 69 269 ZF-HD Transcription Factor Family AT4G24660 51.980 1.07e-64 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Mepo3g07082 ZF-HD_dimer 1.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g07082 - - mtr:11435175 457.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g07082 3 84504601 84506237 Mepo3g07082 3 84504601 84506237 ECH