Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g07069 ATGGCTTCTTCACCTTCTTCCTTCTTCAACATTCTCACTCTATTCTTATTGCTATTGCAACACTCCCTGATCATTGTAGTTGCATTTACAGAAACCAGTCCACCCCCAACTCCCATTCCCGAAGACGCCACCACCATTGCTCAATCTCAATCTCAATCTCAACCTCAACACACCGTTACACCATTCAAACCAAGCGTAGCTATTGTTATTGGCGTTTTCACTATCCTCTTCTCTCTCACCTTTCTCCTACTTCTCTACATCAAACACATCAACAACAGCAACAACAATGGCGAGATAATTAACATCGACAGTAGTAGCTTTGGCGGCAGCGGCGGAGGAGGAGTTTCGTCTTTCGCCGGTGGAAGGAAAAATTCCGGTATAGACCGATCGGTAGTTGAATCGTTGCCGATTTTCAGATTCGGATCACTTACCGGCCAAAAGGAAGGTCTAGATTGCGCGGTTTGTCTTTCGAAATTTGAATCTTTAGAAGTTTTACGGTTATTGCCGAAATGCAAGCACGCATTTCACGTTGAATGTGTTGATACTTGGTTGGATGCACATTCAACTTGTCCTCTTTGCCGTTACAGAGTTGATCCTGAAGACATTCTTCTCGTGATAGACGATTCATCATCATCGCAACAGGTTCAGAATCAAAAAGAAGAAGAAGAAGATGATGAATGTGTCGTGAAGATTGAAATTGAAAGAGGAAAAATGATGAGAAACGAGATTGCAGAGTATTATCGAAAGAGACATTCATCGGTAGGGGAAAGGGAATCCGAAAGAAAGAAAACGGCGTCGTTTAGATGGTCATTGGATAGTTCTAGAAAGAAGAATGAGAATTCTGTTGGGCTCGGGCTTGGGCTTGGTTGTTTTGTTGGGCCTGGACCTAGAAAAGACGGGATGTTGTTAACGAAAGAAGAAACGGAGACGGAGAGAAGGAGGAGGAGTAGCGTGGAACGGAGAAGGTTGGAGCATAGGATTATTGTTTCACCTTCGATTACGAATATAAGAAGTGGGCTCCACAAGAATCAACGGTGGAGTGATGTAGAAGCGTGTGATTTGTTGTATCTAACTTCAGAGATGATGATAATGAGTGAGTCACGGAGAGTGAAGCATAGGAATAATGATAGTAGTTGGAATGGCAGAGGTGTAATTAATGAGAGAAGTGTGTCTGAAATCACGGGATTCACCAGGTTCCAAACCAGCAACACCAACAAGCAATAA 1224 0.4314 MASSPSSFFNILTLFLLLLQHSLIIVVAFTETSPPPTPIPEDATTIAQSQSQSQPQHTVTPFKPSVAIVIGVFTILFSLTFLLLLYIKHINNSNNNGEIINIDSSSFGGSGGGGVSSFAGGRKNSGIDRSVVESLPIFRFGSLTGQKEGLDCAVCLSKFESLEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLVIDDSSSSQQVQNQKEEEEDDECVVKIEIERGKMMRNEIAEYYRKRHSSVGERESERKKTASFRWSLDSSRKKNENSVGLGLGLGCFVGPGPRKDGMLLTKEETETERRRRSSVERRRLEHRIIVSPSITNIRSGLHKNQRWSDVEACDLLYLTSEMMIMSESRRVKHRNNDSSWNGRGVINERSVSEITGFTRFQTSNTNKQ 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g07069 407 MobiDBLite consensus disorder prediction 36 59 - -
Mepo3g07069 407 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 44 403 - -
Mepo3g07069 407 MobiDBLite consensus disorder prediction 42 59 - -
Mepo3g07069 407 CDD RING-H2_EL5-like 151 194 - -
Mepo3g07069 407 Pfam Ring finger domain 151 194 IPR001841 -
Mepo3g07069 407 ProSiteProfiles Zinc finger RING-type profile. 152 194 IPR001841 -
Mepo3g07069 407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 201 IPR013083 -
Mepo3g07069 407 FunFam RING-H2 finger protein ATL43 127 201 - -
Mepo3g07069 407 SMART ring_2 152 193 IPR001841 -
Mepo3g07069 407 SUPERFAMILY RING/U-box 139 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g07069 Mepo-Chr3 84348932 84350155 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g07069 64 398 C3H Transcription Factor Family AT5G05810 47.578 9.77e-74 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g07069 K19041 - cave:132189697 285.419