Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g07067 ATGTTAATAAAAAGTTCTCTTCTTAGTTCAGTTGAAGCTGGTCTATGTTATGTATATGATGATGGGAAAGATTTTCAACGTGACCGGATGCCTAGTGGTGAAACTTGTCAGGTTTGTCTGAAATGCAACAAGTACCCTGCTGACTGGTGTAGAAAAGCTGAACCAATGGAAGAGGATAATAGGAATGCTGATGATCCTTTCAACTCAAACTGTCTAAGAAGCTGCGGTCGACCATCAACTGCAAGTATAATGACTGAAAACACTGCACCTAATTTGGTATACAGGAGAAAAAAGCTACGCAAGGGATCAAATTCTTCTCTTTTCAAGCTAGGGCCAACCGATGTGCAGACAAGTGCCAATTTTACTTCATTCACAAGTTCCTCTTTGCACTTGTCATCAGCTGAGGACCAAACAGCTGCTTTTCCAGTTAAGCATCAGATTGAAATTGTCAAAGATCCTACTCTGCCTTCTGTCTTTCTTGATGGAGTAGCAAAAGATACCACACAGAAAAAAATAGGTATTGACAGTGTAAATGATAGTTGTTCCTCTTCAAAGTCAAATATGGTACTTGTTTCAGATTCCTTAGCAACTGAGATGGATGACACTGGTGAATGCTCCTCCTCCAGTTTAATAGTAACAGACTTCACAAGGGAAGAATTAACAGAAACAGATTTCTGCATTAATATTTTAAGAAGCCATGGACTTCTTAGAGGAGATACTCTTACAGATAAGGTGGTTTCCATTGAAGATGCCGTTACCACCGTTAATAACTGTTGTTCCAGATCATGCAAAATATGTGGTCATTTGGATAGTTCATTGAATATGCTTTTATGTGATAATTGTGAAAACTCATATCATCCATGTTGCTACAATACACGTTTGAAAAGAGTACCAAATGATGAGTGGTTTTGTCATTCATGTCTTAATAAAAGGCAAAAATTTCTCAAGGAGACAATTATCAAATCACCACGTATCAACAGTGGAATAGGGAAATCTAGAACTGTCTCAGTTAAGGATGAAATGAATCCCATACTGTTGATGTTGAGAGATACTGAGCCATATACGACTGGTGTGCGAGTTGGTAAAGGTTTTCAAGCAGCAGTCCTTGACTGGTCAGGCCCTGTAAAAAGTGATGAAGACTACTTTCCAGAACCATTGCAAATTAATCCTTCAGAAATTTATAGACCGCAGGAAGAGAATATGAGAAATCCAACTAGACTCAGTTCCATTGGCAACTGGCTTCAATGCCGGGAGGTTGTAGACAAAACTAGGGAAATTATATGTGGAAAATGGCGCAGGGCTCCACTATTTGAAGTTCAAACTGATGACTGGGAGTGCTTCTGTGCTTTTCATTGGGATCCATTTCATGCTGATTGTGCTGTACCTCAGGAGGTGGAAACAGATGAGGTTCTGAAGCAACTGAAGTATATAGAAATGTTGAGGCCGCGACTTGCTGCGAAACAGAGAAAATCAGATTGCACAAATAATGGCAATTGA 1497 0.3941 MLIKSSLLSSVEAGLCYVYDDGKDFQRDRMPSGETCQVCLKCNKYPADWCRKAEPMEEDNRNADDPFNSNCLRSCGRPSTASIMTENTAPNLVYRRKKLRKGSNSSLFKLGPTDVQTSANFTSFTSSSLHLSSAEDQTAAFPVKHQIEIVKDPTLPSVFLDGVAKDTTQKKIGIDSVNDSCSSSKSNMVLVSDSLATEMDDTGECSSSSLIVTDFTREELTETDFCINILRSHGLLRGDTLTDKVVSIEDAVTTVNNCCSRSCKICGHLDSSLNMLLCDNCENSYHPCCYNTRLKRVPNDEWFCHSCLNKRQKFLKETIIKSPRINSGIGKSRTVSVKDEMNPILLMLRDTEPYTTGVRVGKGFQAAVLDWSGPVKSDEDYFPEPLQINPSEIYRPQEENMRNPTRLSSIGNWLQCREVVDKTREIICGKWRRAPLFEVQTDDWECFCAFHWDPFHADCAVPQEVETDEVLKQLKYIEMLRPRLAAKQRKSDCTNNGN 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g07067 498 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 1A 248 318 IPR047171 GO:0006338
Mepo3g07067 498 ProSiteProfiles Zinc finger CW-type profile. 407 467 IPR011124 GO:0008270
Mepo3g07067 498 SUPERFAMILY FYVE/PHD zinc finger 261 313 IPR011011 -
Mepo3g07067 498 Pfam PHD-finger 263 309 IPR019787 -
Mepo3g07067 498 ProSiteProfiles Zinc finger PHD-type profile. 260 310 IPR019787 -
Mepo3g07067 498 SMART PHD_3 262 308 IPR001965 -
Mepo3g07067 498 Gene3D - 411 476 - -
Mepo3g07067 498 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 326 IPR013083 -
Mepo3g07067 498 ProSitePatterns Zinc finger PHD-type signature. 263 307 IPR019786 -
Mepo3g07067 498 FunFam uncharacterized protein LOC106759733 isoform X4 411 476 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g07067 248 308 C2H2 Transcription Factor Family AT3G01460 37.879 1.31e-07 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mepo3g07067 PHD 2.5e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g07067 - - mtr:11430602 973