Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g07045 ATGTACAACTCTATGAACATGTCCGACCAGATCAAGAACAACGAAGATCCTGACAACAACAATCACATCCATTTTGATTCACCAACCCTCGAAGACGCTTCCGGCGAAGGTGAAGGTCAAATCACTGATGTTTCACTCGAAAATGTTTATGTTTCCGGCGATGGAAACCACCCTGATATGTCTGTTCAACAATTTGATGATTCTAGCCAGCTCACACTTTCGTTTCGTGGCCAAGTTTATGTCTTTGATTCTGTTACCCCTGAAAAGGTTCAATCAGTGTTGTTACTGTTAGGTGGATGTGAATTAAATCCGGGTTCACAATGTTTGGACACATCGCCTCTAAATCAGAGGAGTGGTGCTGAATTTCCTACAAGATGTAGTCAGCCACAACGAGCAGCATCGTTGATTAGGTTTCGTCAGAAGAGGAAAGAGCGAAACTTTGATAAGAAAGTTAGATATGAAGTGCGTCAAGAAGTTGCACTAAGGATGCAACGTAGTAAGGGTCAATTTACATCAGCTAAGAAACAAGATGGAGGTAATAGTTGGGGTTCTGATCCAGAGTCAGGGCAAGATGTGGTTCAATCAGAAACGTCATGCACACACTGTGGAATCAGTTCAAAATCTACCCCTATGATGCGAAGGGGGCCGTCTGGCCCTAGGACACTATGCAATGCTTGTGGGCTTTTCTGGGCAAATAGGGGTACTTTGAGGGATCTATCTACTGCTAGGAGAAATCACGAACAACATACTCTTGCGTCACCTGAGCAGGGTATGAGGGATCTATCTAATGTTAAGAGAAACCACCAACCGCACCCTCTTCCACAACCCGAGCAGGTTGGCGAGGGTAATGAGGACTTGAACTGTGGGAATGCTCCTGTGCATAACGATTCTGTTGATGATAAAACAGCTGTGGTATCCGATCAATGA 927 0.4455 MYNSMNMSDQIKNNEDPDNNNHIHFDSPTLEDASGEGEGQITDVSLENVYVSGDGNHPDMSVQQFDDSSQLTLSFRGQVYVFDSVTPEKVQSVLLLLGGCELNPGSQCLDTSPLNQRSGAEFPTRCSQPQRAASLIRFRQKRKERNFDKKVRYEVRQEVALRMQRSKGQFTSAKKQDGGNSWGSDPESGQDVVQSETSCTHCGISSKSTPMMRRGPSGPRTLCNACGLFWANRGTLRDLSTARRNHEQHTLASPEQGMRDLSNVKRNHQPHPLPQPEQVGEGNEDLNCGNAPVHNDSVDDKTAVVSDQ 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g07045 308 CDD ZnF_GATA 198 240 IPR000679 GO:0006355|GO:0043565
Mepo3g07045 308 ProSiteProfiles CCT domain profile. 131 173 IPR010402 GO:0005515
Mepo3g07045 308 ProSiteProfiles Tify domain profile. 64 99 IPR010399 -
Mepo3g07045 308 PANTHER GATA TRANSCRIPTION FACTOR 28 11 278 IPR045280 GO:0006355
Mepo3g07045 308 Pfam GATA zinc finger 199 235 IPR000679 GO:0006355|GO:0043565
Mepo3g07045 308 SMART GATA_3 193 246 IPR000679 GO:0006355|GO:0043565
Mepo3g07045 308 Pfam CCT motif 131 173 IPR010402 GO:0005515
Mepo3g07045 308 ProSitePatterns GATA-type zinc finger domain. 199 226 IPR000679 GO:0006355|GO:0043565
Mepo3g07045 308 Gene3D - 190 251 IPR013088 GO:0006355|GO:0008270
Mepo3g07045 308 ProSiteProfiles GATA-type zinc finger domain profile. 193 249 IPR000679 GO:0006355|GO:0043565
Mepo3g07045 308 MobiDBLite consensus disorder prediction 165 194 - -
Mepo3g07045 308 MobiDBLite consensus disorder prediction 1 38 - -
Mepo3g07045 308 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 196 248 - -
Mepo3g07045 308 SMART tify_2 64 99 IPR010399 -
Mepo3g07045 308 Pfam tify domain 68 98 IPR010399 -
Mepo3g07045 308 MobiDBLite consensus disorder prediction 241 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g07045 Mepo-Chr3 84059832 84065612 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g07045 68 240 Tify Gene Family AT4G24470 66.857 2.32e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mepo3g07045 CCT 9.7e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g07045 - - lja:Lj0g3v0164269.1 346.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo7g01642 7 25689857 25695959 Mepo3g07045 3 84059832 84065612 PCT