Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g07019 ATGAACACTTTACCACTCAATTTTCACTTCAATTCCAATCATGCCCTTCTCTACCTCCTCCTCCTCCTCTTCATCCTCCTTTCTCCGCCACCGTCAACGGCGCAGATTCCAAATTCATTACCACCACCACCACCACCAGACAAAATCACCACTCTCAAATTCGACAAATCCATGGCAATTGTGCTCATCATCTTAATCGGTGTGTTTCTCATCCTCGGTTTTCTCTCAGTCTACACACGACAGTGCGCTGAACAGAGAATGAGAGGAAGATTCGATTTATCTATTCCGATCGCCGGAAGTCACCGGAGACACCGTGGACTTGAGACTGAAATCATTGAAACGTTTCCGACTTTCGTTTACTCCACCGTGAAAGGACTCAAAATTGGAAGAGCTACACTAGAATGCGCCGTGTGTTTAAACGAGTTTCAAGACGATGAAACGCTGCGTTTGATTCCGAATTGTAGCCACGTGTTTCATTCTCAATGTGTTGATGCTTGGCTTGTTAATCACTCCACGTGTCCCGTTTGTCGGGCAAATTTGATTCCAAGACCCGGTGACACTTCTTTCGCTTCAATTCAAATCCTGGATTCAAGTTTATCCGATTCCGATGACCCGACCCGAATTAGTCCTAATAGAGAACCAGGACCAGGTATTGCACTTACATCTCGTTCTCCATCTCCTAAGGTGAATTATTCAGTTACACCGAACCGTGCTCGACCGGTTCGATCAAGTTCAACCGGGTTTAAAATTGGGAACTGGGTTCCGTTTCCACGCTCACATTCAACAGGTCATTCATTGGTTCAAGAAGGAGAGAATCACGAGCGGTTCACTTTGAGATTACCGGAGGAAGTGAGGAACCGGTTGGTAGGTTCAACTCCGAACCGGGTGACGAGTTGTGGGGTTACTTTTACTCGAGAGGGTAGTGGAAGGAGGGGATATAGAACGAGAAGTGTGGGAAGTAGTGCTAATGCGAGAAGCTATGATTGGTTTAGCAGGCCGGACCGGAGGGGTTTCTCTTGGACTCCACCGTTTATGGGCCGAACCGGTTCGAGTTGGTCGAAGAATAAGTCACCTGGGAAAATGGATGATGTTGGAGAACGGTCTTCTGATCGGTTGTTTGAAGGTAATCGGGGTTAG 1137 0.4714 MNTLPLNFHFNSNHALLYLLLLLFILLSPPPSTAQIPNSLPPPPPPDKITTLKFDKSMAIVLIILIGVFLILGFLSVYTRQCAEQRMRGRFDLSIPIAGSHRRHRGLETEIIETFPTFVYSTVKGLKIGRATLECAVCLNEFQDDETLRLIPNCSHVFHSQCVDAWLVNHSTCPVCRANLIPRPGDTSFASIQILDSSLSDSDDPTRISPNREPGPGIALTSRSPSPKVNYSVTPNRARPVRSSSTGFKIGNWVPFPRSHSTGHSLVQEGENHERFTLRLPEEVRNRLVGSTPNRVTSCGVTFTREGSGRRGYRTRSVGSSANARSYDWFSRPDRRGFSWTPPFMGRTGSSWSKNKSPGKMDDVGERSSDRLFEGNRG 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g07019 378 CDD RING-H2_EL5-like 134 177 - -
Mepo3g07019 378 PANTHER RING FINGER DOMAIN-CONTAINING 40 187 - -
Mepo3g07019 378 MobiDBLite consensus disorder prediction 198 244 - -
Mepo3g07019 378 MobiDBLite consensus disorder prediction 359 378 - -
Mepo3g07019 378 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 182 IPR013083 -
Mepo3g07019 378 ProSiteProfiles Zinc finger RING-type profile. 135 177 IPR001841 -
Mepo3g07019 378 MobiDBLite consensus disorder prediction 338 378 - -
Mepo3g07019 378 Pfam Ring finger domain 134 177 IPR001841 -
Mepo3g07019 378 SUPERFAMILY RING/U-box 129 186 - -
Mepo3g07019 378 MobiDBLite consensus disorder prediction 223 244 - -
Mepo3g07019 378 FunFam E3 ubiquitin-protein ligase ATL6 97 183 - -
Mepo3g07019 378 SMART ring_2 135 176 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g07019 Mepo-Chr3 83805231 83806896 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g07019 11 348 Rapid Response to Elicitors AT3G05200 37.714 6.00e-60 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g07019 K10664 - gmx:100815982 352.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g07019 3 83805231 83806896 Mepo3g07019 3 83805231 83806896 ECH
Mepo7g01582 7 24925750 24927903 Mepo3g07019 3 83805231 83806896 PCT