LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mepo3g07003	ATGGATTCTCAACAAGCTCACACTCTCATTCCGAGAGATCGTAGAATAGATGCTCTTGGCGATCTTCGAGTTCTTCCCGATGAAATCCTCTGCTCAATTCTCGAACGACTCAGTCCTCAAGATGCTGCTCGCGTCGCTTGCGTTAGCAGTGTGATGTATATACTATCCAACGAAGAACCACTATGGATGACTCTATGCCTAAAAGGAGGAGCATCTGGTTTTCTTCAATACAAAGGCTCTTGGAAGAAAACTGCTCTGCATAATTTGAATCTTCCAGAGAAGTACAAAGAGTGCCATAGACAGCAGCCTTTACATTTTGATGGATTCAACTCTTTGTTTTTGTATTGGAGATTATACCGGTGTCATACCACATTGGATACATTTTATACAGAGGGTGGTAATGTGGAAAGAATAAATGACATCTCATTGAAGGACTTCAGCAACAAGTATGACATGAAGAAACCGGTCATGCTTAATGGACTGGCGGATACATGGCCTGCCAGGCAGAAATGGACAACTGATCAGCTACTACAAAACTATGGAGACGTTGCATTTAAAATTTCTCAAAGGAGTTCCAAAAAGATCTCCATGAAGTTCAAGGATTATGTCTCGTACATGGAAGTTCAACACGATGAAGACCCATTATATATTTTTGACGAAAAGTTTGGTGAGCATGCCCCTAGCTTATTGAAGGATTACTGTGTGCCTCATCTTTTTCAAGAAGACCTCTTTGATATCTTAGATACAGATAAACGACCATCATATAGGTGGCTTATAATTGGACCACAGAGATCTGGTGCCTCTTGGCATGTTGATCCAGCTCTTACAAGTGCATGGAATACTCTTCTTTCTGGCCGTAAAAGGTGGGCATTATATCCTCCTGGAAAAGTGCCTTTAGGTGTGACGGTACATGTTAATGAAGAAGATGGTGATGTCAGTATCGAGACTCCATCATCACTGCAGTGGTGGTTAGATTTTTATCCTCTTCTTGCTGACGAAGACAAGCCAATTGAATGTACACAACTACCTGGAGAGACAATTTATGTTCCGAGTGGATGGTGGCACTGTATTTTAAATTTGGAAACAACTATTGCAGTCACACAGAATTTTGTGAATTCTAATAACTTTGAATTTGTATGTTTGGATATGGCACCTGGTTATCGTCATAAAGGAGTCTGCCGTGTAGGTTTGCTTGCTCTTGAAGAAGATGTTTATGAAAATGTCATACAGAATATGTCATGTAATGAAGAAAACTTAAGTTACTCTGATTTGTCAAGGAAACAGAAAAGATCCAAAACTCTGAAAGATGTAGACGATCTATGTTTAGAAAGAGAAATAAGTGGTGCGTCCAGAAGCTATAATTTATGGAAAGGTGGATTTTCTTATGATATAAATTTCTTAACCATGTTTTTGGATAAGGATAGAGACCACTACAATTTTGAGTGGAGCTCGGGCAACAGCATTGGTCAACGGGAACTAAGAGAATGGTTATCCAAGCTTTGGATTCAAAAACCAGATATGAGAGATCTAATATGGAAGGGAGCATGTATTGCACTAAATGCCAGCATGTGGGTAGAATGCCTGTCAAAAATTTGTACCTTCAACAACTTGCCCCCTCCCACAGATGACGAAAGGCTTCCTGTTGGTTCGGGTAGCAATCCTGTTTATCTAGTGGGGAACTATGTTGTTAAGATTTTTGTCGAAGAAGGACTGGAAGCATCGCTTTATGGTTTAGGCGCAGAGTTAGAGTTTTATAGTCTGCTGCTTGAAGCCAATTCCCCTCTCAGGAAACATATTCCTAGTGTTATGGCCAGTGGGGTTGTTTATCTTGAAGGCGGATCCTATACCAATTTAAGTTGGGATGGAAAAGGAGTTCCCAGTGTCATTTTGAAGAGCAATATTATCACAGAGAAATGCAATGTGGATGGTTTCCCGTTTGGGGTATGGGGCAAGCAATTGTTTGAGTATAGGAATACTGGGATTCCAGTGGACGGATCAGTTAGTTTAGCTGGTAACTCAAGTATATGGCCATATTTGATAATTAAGCGATGCGAAGGGAATATGTTTGCAGACTTAAGAGACAGACTATCATGGGAAGATACAACAAACTTGGCCTCCTTCCTGGGGGAGCAAATGCGCCACCTTCATCTTTTGCCACATCCACCTTTAAACAATTCATTTATATCTGATATTGAACGTGAATTAAACTGGTCTGAGGTGAATGGTTGCATTGCAAATGTTAATTGTAAATCAAACAATGCAGCAGAATGGGGACTCTTCACCAGAATCTTAACAAAGAAGAGGAAGGACGTCTCAAGCCGTTTGACCAAGTGGGGAGATCCAATTCCTAGCAAACTGATTGAGAAAATCGATGAATATCTACCATCTGATTTGTCTAAGCTGCTAAATATAAATGAGAATTTCTCAAGTGGCGCTTCTAAACCCTGCTCTTGGATACACACTGACATTATGGATGATAATATTTACATGGAACCATCATCGATTTGCTCTACCTCCAGTGGGAATACAGAAGATGCTGCCGAGGGAGACAATGGTTTATTGAGTGAGCACGTTGGAGTGAAATCCTGGTGTCCTAGTTACCTCCTTGATTTCAGTGATCTTTCTATGGGTGATCCTATTTTTGACTTGATACCAATTTATTTGGATGTGTTTAGAGGCGATTCATATCTTCTTAAGCAATTTTTAGAAAGTTACAAACTTCCTTTTTCTGGCAACATATCAAAGTACGAGTCAACAGAGGGTGGTCTAAAGTTTGGTCGCCTATCATATGTTGCTATGTGTTATTGTATTTTGCATGACGATAATGTCTTGGGAGCTATTTTTAGCATATGGGACGAACTGAGATCATCAGAGTCATGGGAAGAAGTTGAGATGACAGTGTGGGGAGAGTTGAACAATTACAAAGGCTTTCTTTGA	2937	0.4021	MDSQQAHTLIPRDRRIDALGDLRVLPDEILCSILERLSPQDAARVACVSSVMYILSNEEPLWMTLCLKGGASGFLQYKGSWKKTALHNLNLPEKYKECHRQQPLHFDGFNSLFLYWRLYRCHTTLDTFYTEGGNVERINDISLKDFSNKYDMKKPVMLNGLADTWPARQKWTTDQLLQNYGDVAFKISQRSSKKISMKFKDYVSYMEVQHDEDPLYIFDEKFGEHAPSLLKDYCVPHLFQEDLFDILDTDKRPSYRWLIIGPQRSGASWHVDPALTSAWNTLLSGRKRWALYPPGKVPLGVTVHVNEEDGDVSIETPSSLQWWLDFYPLLADEDKPIECTQLPGETIYVPSGWWHCILNLETTIAVTQNFVNSNNFEFVCLDMAPGYRHKGVCRVGLLALEEDVYENVIQNMSCNEENLSYSDLSRKQKRSKTLKDVDDLCLEREISGASRSYNLWKGGFSYDINFLTMFLDKDRDHYNFEWSSGNSIGQRELREWLSKLWIQKPDMRDLIWKGACIALNASMWVECLSKICTFNNLPPPTDDERLPVGSGSNPVYLVGNYVVKIFVEEGLEASLYGLGAELEFYSLLLEANSPLRKHIPSVMASGVVYLEGGSYTNLSWDGKGVPSVILKSNIITEKCNVDGFPFGVWGKQLFEYRNTGIPVDGSVSLAGNSSIWPYLIIKRCEGNMFADLRDRLSWEDTTNLASFLGEQMRHLHLLPHPPLNNSFISDIERELNWSEVNGCIANVNCKSNNAAEWGLFTRILTKKRKDVSSRLTKWGDPIPSKLIEKIDEYLPSDLSKLLNINENFSSGASKPCSWIHTDIMDDNIYMEPSSICSTSSGNTEDAAEGDNGLLSEHVGVKSWCPSYLLDFSDLSMGDPIFDLIPIYLDVFRGDSYLLKQFLESYKLPFSGNISKYESTEGGLKFGRLSYVAMCYCILHDDNVLGAIFSIWDELRSSESWEEVEMTVWGELNNYKGFL	978

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mepo3g07003	978	SUPERFAMILY	Protein kinase-like (PK-like)	676	908	IPR011009	-
	Mepo3g07003	978	FunFam	F-box protein At1g78280	115	372	-	-
	Mepo3g07003	978	Pfam	Cupin-like domain	152	374	IPR041667	-
	Mepo3g07003	978	SUPERFAMILY	F-box domain	16	76	IPR036047	GO:0005515
	Mepo3g07003	978	ProSiteProfiles	F-box domain profile.	19	65	IPR001810	GO:0005515
	Mepo3g07003	978	Gene3D	Cupin	119	372	-	-
	Mepo3g07003	978	SUPERFAMILY	Clavaminate synthase-like	125	380	-	-
	Mepo3g07003	978	SMART	cupin_9	219	382	IPR003347	-
	Mepo3g07003	978	ProSiteProfiles	JmjC domain profile.	224	387	IPR003347	-
	Mepo3g07003	978	Gene3D	-	10	97	-	-
	Mepo3g07003	978	PANTHER	ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD	19	592	-	-
	Mepo3g07003	978	SMART	fbox_2	25	65	IPR001810	GO:0005515
	Mepo3g07003	978	Pfam	F-box-like	24	68	IPR001810	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mepo3g07003	Mepo-Chr3	83632283	83642822	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mepo3g07003	8	974	Glycosyltransferase	AT1G78280	59.939	0.0	1186

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	Jumonji	Mepo3g07003		Cupin_8	3.1e-22	CL0029

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mepo3g07003	-		-	tpra:123918034	1845.09

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mepo3g07003	3	83632283	83642822	Mepo3g07003	3	83632283	83642822	ECH